Query= MSMg01no401_e04.b1 MSMg01no401_e04.b1 CHROMAT_FILE:
MSMg01no401_e04.b1 PHD_FILE: MSMg01no401_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:50 2005
(548 letters)
>mm_chr16_16990191_16991138
Length = 948
Score = 936 bits (484), Expect = 0.0
Identities = 538/568 (94%), Gaps = 24/568 (4%)
Strand = Plus / Minus
Query: 1 ataaaaagtcaggtgtaactgtgaatacctgtaaccctagcacttagaatgtggacacca 60
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 658 ataaaaagtcaggtgtaaccgtgaatacctgtaaccctagcgcttagaaggtggacacca 599
Query: 61 actgacaaccaagtattcaaatacaagagtctacagaggacattttcattcaaaccacca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 actgacaaccaagtattcagatacaagagtctacagaggacattttcattcaaaccacca 539
Query: 121 cagggaccctggagagaataatctagtctgtggactttttaatgcatttaaagcaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagggaccctggagagaataatctagtctgtggactttttaatgcatttaaagcaacaga 479
Query: 181 acccttgccttatgttgctggtcctaataatcatgtgtgaaggttaatagatgactgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acccttgccttatgttgctggtcctaataatcatgtgtgaaggttaatagatgactgaaa 419
Query: 241 ggaaaac----ttttaggtgggagagaaggaaagaccaaagtgctgatgcttcaaaaagg 296
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggaaaacaaaa----aggtgggagagaaggaaagaccaaagtgctgatgcttcaaaaagg 363
Query: 297 aggactgtcatccgtaaggttttgttcgtaaggtttcccg--------ggc---gt--g- 342
||||||||||||||||||||||||||| |||||||||||| ||| || |
Sbjct: 362 aggactgtcatccgtaaggttttgttcataaggtttcccgtacgtgaaggctctgtcggc 303
Query: 343 --taggaaaggtgacagtttgaaaaccccagacagaacacaatcctttcaattttctttg 400
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccttggaaaggtgacagtttgaaaaccccagacagaacacaatcctttcaattttctttg 243
Query: 401 tcaacaaggaacctttcactttgttgtttgtaactttctctagtggttctgctcacattc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcaacaaggaacctttcactttgttgtttgtaactttctctagtggttctgctcacattc 183
Query: 461 cataaagcctcacgtcagaaccctccttgcatctttctcctcacacagagtgggccattt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cataaagcctcacgtcagaaccctccttgcatctttctcctcacacagagtgggccattt 123
Query: 521 caaaggtcaggctgtcagtctttactag 548
||||||||||||||||||||||||||||
Sbjct: 122 caaaggtcaggctgtcagtctttactag 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_e04.g1 MSMg01no401_e04.g1 CHROMAT_FILE:
MSMg01no401_e04.g1 PHD_FILE: MSMg01no401_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:50 2005
(466 letters)
>mm_chr16_16807824_16808689
Length = 866
Score = 685 bits (354), Expect = 0.0
Identities = 436/478 (91%), Gaps = 33/478 (6%)
Strand = Plus / Plus
Query: 1 tctacactgattaacaaaggtggctgcaacagtgtgcaatcccaaaacccgtgcgggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacactgattaacaaaggtggctgcaacagtgtgcaatcccaaaacccgtgcgggttt 260
Query: 61 ttgtttatcttcgccattttgtcagggataaaatggttttttattgtttgcatttcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttatcttcgccattttgtcagggataaaatggttttttattgtttgcatttcccta 320
Query: 121 gttgctaggattgatgaacaccttcttcttcttcttcttcttcttcttcttcttcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgctaggattgatgaacaccttcttcttcttcttcttcttcttcttcttcttcttctt 380
Query: 181 cttcttctccttcttcttcttcttcttcttcttcttcttcctcctc--ct-------cct 231
|||||||| ||||||||||||||||||||||||||||||| || || || |||
Sbjct: 381 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcct 440
Query: 232 cctcctcctccttctttttttcttccttcttcttcttctttcttctttcttcttccttct 291
|||||||||||| || | |||| || || || || |||| || |||||||||
Sbjct: 441 cctcctcctcctcct------cctcctcctcctcctcct--cttc---ct-cttccttct 488
Query: 292 tttctttcttctcttttcttttcttctt---tcttcttcttctttcttcttttcttcttc 348
| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 489 t--ctt-cttctcttttcttttcttcttctttcttcttcttctttcttcttttcttcttc 545
Query: 349 ttttcttcttcttcttctttcttccttcttctttccttcttcttcttctttcttccttct 408
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttttcttcttcttctt---tcttccttcttctttccttcttcttcttctttcttccttct 602
Query: 409 tcttcttcttctttcttcttccttcttttctttcttcttcttctcttttcttttcttc 466
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcttcttctt---tcttcttccttcttttctttcttcttcttctcttttcttttcttc 657
Score = 132 bits (68), Expect = 6e-35
Identities = 129/152 (84%), Gaps = 11/152 (7%)
Strand = Plus / Plus
Query: 143 ttcttcttcttcttcttcttc-ttcttcttcttcttcttcttcttctccttcttcttctt 201
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 677 ttcttcttctt-ttcttcttctttcttcttcttcttcttcttcttcttcttcttcttctt 735
Query: 202 cttcttcttcttcttcttc--ctcctcctcctcctcctcctccttctttttttcttcctt 259
||||||||||||||||||| || || || || || || || |||||| | |||| ||
Sbjct: 736 cttcttcttcttcttcttctgctgctgctgctgctgctgctgcttcttctg--cttc-tt 792
Query: 260 cttcttcttct--ttcttct--ttcttcttcc 287
|| |||||||| ||||||| |||| |||||
Sbjct: 793 ctgcttcttctgcttcttctgcttctgcttcc 824
Score = 128 bits (66), Expect = 9e-34
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 142 cttcttcttcttcttcttc-ttcttcttcttcttcttcttcttcttctccttcttcttct 200
||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 679 cttcttctt-ttcttcttctttcttcttcttcttcttcttcttcttcttcttcttcttct 737
Query: 201 tcttcttcttcttcttct 218
||||||||||||||||||
Sbjct: 738 tcttcttcttcttcttct 755
Score = 122 bits (63), Expect = 5e-32
Identities = 75/79 (94%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 143 ttcttcttcttcttcttcttcttcttc-ttcttcttcttcttcttctccttcttcttctt 201
||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 672 ttctt-ttcttcttctt-ttcttcttctttcttcttcttcttcttcttcttcttcttctt 729
Query: 202 cttcttcttcttcttcttc 220
|||||||||||||||||||
Sbjct: 730 cttcttcttcttcttcttc 748
Score = 118 bits (61), Expect = 7e-31
Identities = 76/81 (93%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 142 cttcttc-ttcttcttcttcttcttcttcttcttc-ttcttcttcttctccttcttcttc 199
||||||| ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 664 cttcttctttctt-ttcttcttctt-ttcttcttctttcttcttcttcttcttcttcttc 721
Query: 200 ttcttcttcttcttcttcttc 220
|||||||||||||||||||||
Sbjct: 722 ttcttcttcttcttcttcttc 742
Score = 116 bits (60), Expect = 3e-30
Identities = 75/80 (93%), Gaps = 4/80 (5%)
Strand = Plus / Plus
Query: 143 ttcttcttcttc-ttcttcttcttcttcttcttcttcttc-ttcttctccttcttcttct 200
|||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||||||
Sbjct: 659 ttcttcttcttctttctt-ttcttcttctt-ttcttcttctttcttcttcttcttcttct 716
Query: 201 tcttcttcttcttcttcttc 220
||||||||||||||||||||
Sbjct: 717 tcttcttcttcttcttcttc 736
Score = 112 bits (58), Expect = 4e-29
Identities = 76/82 (92%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 142 cttc-ttcttcttcttc-ttcttcttcttcttcttcttcttcttctt-ctccttcttctt 198
|||| |||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||
Sbjct: 654 cttctttcttcttcttctttctt-ttcttcttctt-ttcttcttctttcttcttcttctt 711
Query: 199 cttcttcttcttcttcttcttc 220
||||||||||||||||||||||
Sbjct: 712 cttcttcttcttcttcttcttc 733
Score = 83.9 bits (43), Expect = 2e-20
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 142 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctccttcttcttctt 201
||||||||||||||||||||||||||||||||||||||||| || || || || || ||
Sbjct: 715 cttcttcttcttcttcttcttcttcttcttcttcttcttctgctgctgctgctgctgctg 774
Query: 202 cttcttcttcttcttcttc 220
|| |||||||| |||||||
Sbjct: 775 ctgcttcttctgcttcttc 793
Score = 78.1 bits (40), Expect = 1e-18
Identities = 71/82 (86%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 142 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctccttct--t-ctt 198
||||||||||||||||||||||||||||||||||| || || || || || || | |||
Sbjct: 721 cttcttcttcttcttcttcttcttcttcttcttctgctgctgctgctgctgctgctgctt 780
Query: 199 cttcttcttcttcttcttcttc 220
||||| |||||||| |||||||
Sbjct: 781 cttctgcttcttctgcttcttc 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 583
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 18
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
