BAC Information

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BAC

Clone NameMSMg01-401K01
Chromosome16 (Build37)
Map Location 24,076,856 - 24,077,399
singlet/doubletsinglet
Overlap genenone
Upstream geneKng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6
Downstream geneEG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K01.T7 (MSMg01no401_k01.b1)MSMg01-401K01.TJ (MSMg01no401_k01.g1)
ACCAG500967AG500968
length783750
length of high quality
(start - end)
34 (254 - 287)544 (76 - 619)
definitionCHROMAT_FILE: MSMg01no401_k01.b1 PHD_FILE: MSMg01no401_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:18 2005CHROMAT_FILE: MSMg01no401_k01.g1 PHD_FILE: MSMg01no401_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAAATACGCTACCGCTACACTACTCCCTTTTTCCGAAAGAGGGNGGA
AATCAGGATTTTTCCCACTGTTCAGTGACATTCAGGATTGCCTCTGGTAT
TACACTATTACTTACAATACCACCACGTTGCTCCCATATACTCTAATTTA
TAATGTTTTATGAAGCAGAACGGGCTGTGTTTTTAGAGCATCGCATTATC
TCATGATATGGTTAGCTACAACGGAACTCCCCAGTTAGAACCATGATTTG
TTTGTGAAAGTCCTTGCCCTAGGAGAGTAAAGACCTCACACCTGGCTTTT
AAGACTATAGCTGATTTTTATTTTGGGCTGACTCTGTCTCACTTATTTTA
TTGCCCATCTCCCTGCCACTCCTTGCGCTCACCCTCCCCCGCCTTGTGTA
ATAGCTTCCACCCTTCTCGGTAACCTCATTTGTATCTTGTCGATGTGTCT
CTTAACTTCTCTATTTTCTTCTGTTTATAAAGTTCGACGCTCTATTTGAC
CTAGTACTTTCATGATTCTACACAACCTCTCCTGTGTTGTATCTGACTGT
CATCTCATCCACCACTTTGTCCATTCTGCAATCTACAGAACTCGTCTCCC
CCCCATTTTACTGTTTCTATATCCGCCTCCCTCTCTCCCCTATCCCCCTG
TCCTCTTTTTATCCATCCTTTTTTCTCTCCTCCCCACTTCTCCCTTTCTT
TTTCCTTTTCCTCCTCCTCTTTTCTTATTCCCCTCCCACTTTTTTTCTTC
CTTCCCCCTCCTTTCACCCCCGCCATTTTCCGC
GACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGGACTCTGAAGAAAATAGAG
TAGAGGTCACAGCCAAATCTGCCCGCGTGTCGAGAGGCTGGATTCCAGAA
ACGAGGGAAACAGAATATTGTTTGTGAGAATTGCAAGCATCTGGAGAGTC
AGAGGCATGAGGCAATGATGGCACAACCAGGGGATAGCATTTTCTTGAAA
AGGCCTGGAATTTTCATGGGTGAGAGAGCAGAATGTTGTACTGAAATGAC
AAGTCTCCACTCAAAATCTCTAAGCCACTCTAGACTTGCTGTGTGACACT
GGAAACCAACCTCTCTCCATCTTGTTTTCCTTACAAGGCTAAGAATGTAT
GGCCAGGCTTGACAGAGGGCACCGATGAGATACTGCACGTGAAACTCCTA
TAGCTGGCAACGTTAGATAAAGGAGAAGTGCCAATATAAACAGCCCTATC
CACTGTGCTTTCTCACGTGCCTAGGCAAGGGGCTTGTGCTGGCATGGCTA
ACATTCTCTACTTTCAGAGAGCAAGACACAAAGAGATGGAATAGCCACGG
GTATCATTCCATATCACCTGTACCAAGAAGTAGAGTGTCCCTTGGGAGAA
AGACCTCAGTGCCTACCCATGCCATTGTACTTCCTCTTCTGAGAATGTCT
CCATTACAGAACTATCCAGGGTGTGGTCCCCGACTTTAGAGACTTCTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k01.g1 MSMg01no401_k01.g1 CHROMAT_FILE:
MSMg01no401_k01.g1 PHD_FILE: MSMg01no401_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:18 2005
         (544 letters)



>mm_chr16_24076656_24077599
          Length = 944

 Score =  998 bits (516), Expect = 0.0
 Identities = 537/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctggactctgaagaaaatagagtagaggtcacagccaaatctgcccgcgtgtcgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtctggactctgaagaaaatagagtagaggtcacagccaaatctgcccgcgtgtcgaga 685

                                                                       
Query: 61  ggctggattccagaaacgagggaaacagaatattgtttgtgagaattgcaagcatctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggctggattccagaaacgagggaaacagaatattgtttgtgagaattgcaagcatctgga 625

                                                                       
Query: 121 gagtcagaggcatgaggcaatgatggcacaaccaggggatagcattttcttgaaaaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagtcagaggcatgaggcaatgatggcacaaccaggggatagcattttcttgaaaaggcc 565

                                                                       
Query: 181 tggaattttcatgggtgagagagcagaatgttgtactgaaatgacaagtctccactcaaa 240
           | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 564 ttgaattttcatgggtgagagagcagaatgttgtgctgaaatgacaagtctctactcaaa 505

                                                                       
Query: 241 atctctaagccactctagacttgctgtgtgacactggaaaccaacctctctccatcttgt 300
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acccctaagccactctagacttgctgtgtgacactggaaaccaacctctctccatcttgt 445

                                                                       
Query: 301 tttccttacaaggctaagaatgtatggccaggcttgacagagggcaccgatgagatactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttccttacaaggctaagaatgtatggccaggcttgacagagggcaccgatgagatactg 385

                                                                       
Query: 361 cacgtgaaactcctatagctggcaacgttagataaaggagaagtgccaatataaacagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacgtgaaactcctatagctggcaacgttagataaaggagaagtgccaatataaacagcc 325

                                                                       
Query: 421 ctatccactgtgctttctcacgtgcctaggcaaggggcttgtgctggcatggctaacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatccactgtgctttctcacgtgcctaggcaaggggcttgtgctggcatggctaacatt 265

                                                                       
Query: 481 ctctactttcagagagcaagacacaaagagatggaatagccacgggtatcattccatatc 540
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 264 ctctactttcagagagcaagacacaaagagatggaatagccacggatatcattcaatatc 205

               
Query: 541 acct 544
           ||||
Sbjct: 204 acct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)