Query= MSMg01no401_p22.b1 MSMg01no401_p22.b1 CHROMAT_FILE:
MSMg01no401_p22.b1 PHD_FILE: MSMg01no401_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:45 2005
(533 letters)
>mm_chr16_54924123_54925055
Length = 933
Score = 948 bits (490), Expect = 0.0
Identities = 517/526 (98%), Gaps = 2/526 (0%)
Strand = Plus / Plus
Query: 9 gaattcaccatttattccagatattctaaaaattgctatcctcaatgagatataacgaca 68
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209 gaattcaccatttagcccagatattctaaaaattgctatcctcaatgaaatataacgaca 268
Query: 69 catgcgtttagtctttgtacttgagagttggaagcaggaatatcaggagtaataaaatat 128
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 269 catgcgtttagtctttgtacttgagagttggaagcaggaaaatcaggagtaacaaaatat 328
Query: 129 ggcatacataatggggttcacagtagctatgtgagatcttatatcaacaaaacaaaataa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggcatacataatggggttcacagtagctatgtgagatcttatatcaacaaaacaaaataa 388
Query: 189 gggctatggatatgcctctgtgggtaaagttcccattgtacaggcaggaagacctgaaaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gggctatggatatgcctctgtgggtaaagttcccattgtacaggcaggaagacctgaaaa 448
Query: 249 tgctgggtgtgggagcagtatatgcctccaaaaactccagttcttgccaaggatacagat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgctgggtgtgggagcagtatatgcctccaaaaactccagttcttgccaaggatacagat 508
Query: 309 aagcagatctcagtttcactgactaaccagtgtagtcaaagtcataagcttcaagttctg 368
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 509 aagcagatctcagtttcactgactaaccagtgtagtcaaagtcgtaagcttcaagttctg 568
Query: 369 tgagagactgtttcagaaatatgatggatgggccagaaagatagcgcaaggagataagag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgagagactgtttcagaaatatgatggatgggccagaaagatagcgcaaggagataagag 628
Query: 429 cacatgccacta-ctcctgatcacctgactccaattcctgaaatatacataaagagagaa 487
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cacatgccactagc-cctgatcacctgactccaattcctgaaatatacataaagagagaa 687
Query: 488 aagaactaattcatgtagtatgtcctctggcctctgcatctacaca 533
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 688 aagaactaattcatgtaatatgtcctctggcctctgcatctacaca 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_p22.g1 MSMg01no401_p22.g1 CHROMAT_FILE:
MSMg01no401_p22.g1 PHD_FILE: MSMg01no401_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:45 2005
(247 letters)
>mm_chr16_55102715_55103364
Length = 650
Score = 437 bits (226), Expect = e-127
Identities = 243/250 (97%), Gaps = 3/250 (1%)
Strand = Plus / Minus
Query: 1 agaaccacttataggagagactgttagtcttcgtgatggctttcctcttctttatttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agaaccacttataggagagactgttagtcttcgtgatggctttcctcttctttatttttc 391
Query: 61 ttatttcctcagtgtaaaataagttaggaatgaagtagacaggagtaatgc---tagcgc 117
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 390 ttattttctcagtgtaaaataagttaggaatgaagtagacaggagtaatgctagtagcgc 331
Query: 118 ccaggagagaagtgtgaacagcttgttgttttcctttgcaaccagaaaccttgaagagga 177
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccaggagagaaatgtgaacagcttgttgttttcctttgcaaccagaaaccttgaagagga 271
Query: 178 tgttatctgacccaggcacttctgaaaggacctcagctacttttcaccaaagagtgtgtg 237
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtcaactgacccaggcacttctgaaaggacctcagctacttttcaccaaagagtgtgtg 211
Query: 238 ggacctcctt 247
||||||||||
Sbjct: 210 ggacctcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 650
Length adjustment: 9
Effective length of query: 238
Effective length of database: 641
Effective search space: 152558
Effective search space used: 152558
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
