BAC Information

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BAC

Clone NameMSMg01-402L04
Chromosome16 (Build37)
Map Location 19,018,288 - 19,018,524
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L04.T7 (MSMg01no402_l04.b1)MSMg01-402L04.TJ (MSMg01no402_l04.g1)
ACCAG501784AG501785
length786779
length of high quality
(start - end)
237 (77 - 313)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no402_l04.b1 PHD_FILE: MSMg01no402_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:41 2005CHROMAT_FILE: MSMg01no402_l04.g1 PHD_FILE: MSMg01no402_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATTTGCGGCCGCAAAACGACTACTATTTTCAGAACATCCGCGGAATCAGN
ATACATTACATATAACTGAATGNGNGGCACTTTTACTGACAAGGAAAAAA
GAAAGCTAAAACCATGCAACAGGCTGCAGCAGCTGCAAATAAAAAGGCTG
TTCAGAGACCATCAAATTCAGCTAATACCCAAGGAAATGCAGCATCAAAT
CCTCTGGTCCCTGATTACCTGAAACTAAATCCTATTCCTTAACAAGTTAC
CAGAAGAGATGAGTGAGATAACGTTATCTGTGCCATTAAACCAGTTCCCT
GGTTTTAAGGAATTTATTTTTGGCACCAAGGAGGTATAACATTGCATTTG
TAGAATTTGAAAATGATGGGCAGGCTGGAGCTGCCAGAGATGCTCTTTAA
GGATTTAAGATCATGCGATCCCATGCCATGAACATTACCTATGCCAAGAA
ATAGCATGTGGAATCCAGCTTTAAAAGACTTTGGCAATATTTATATGTTT
TTTTACCATGTTTTATTCAAGCCATTTTAAATGATTGAAAGTGAAGGTGA
AGTTTGCAGCAAACTGTCACCTATATTTTCCTACAATTTTTGCCTATACA
ATCCCCTTAATTCTGTATCATTAAACTCATCTTGCTCATAAAAAAAGAAC
TATATCGGTCTTTGCTGCTCTGTTTATTTCCCTTTTGGTTCAAAAAACAC
AATCGCCCCTTTATTACATCCTTTTTGGCTCTCATTCGTGTTTCCCTAAC
TTTAATTTCTCCCTCTCAACCCCTCCCAATACTGTC
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGATGAAGCCAGATATGAAAGGCAGAAT
GAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTTTATTATTA
TTTTTATTTATTTTTGTGGCTTTTCGAGACAGAGTTCCCTGGCTGTCCTG
GAACTCACTTTGTAGACTAGGCTGGCCTTGAACTCAAAAATCCACCTGCC
TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGCCC
TCCGCTACATTTATTATTTTTGGTTCTGATGGTTTGTCTGTTTTTCAAGT
GCTAGGATTGAACCAGAACCTCGTGAATATTAAGCATGCCATACACTCTG
CCACTGAGGCTCCCCCATACCCCATTTTCTTACTGTTTTATTGTCTTCAG
ATCTGCACTTTGCATGATGTAAGGTCTTTTGACTTGCTGATCCCGCTATT
TAACATTTGTTCTCTGAACATAATTCTTATTGAAGAATTATTTATACCGA
TTACACCTCCTCTCTATTTTGACAGGTCATGTTGCTTATTGCTGTTTTCG
CTTTCTCTTTTTCCATTTATACCCACTCTTTCTTTTCACTCTTCCCTTTT
ACTCCTTTCTTTTCTCCCTCCCCTTATTTCTTCCCCACCTCTGCCCCTCT
CATACTCCTTTTCGTCCCCTTCCACACTCTCTCTTTTCTTTTATTTCTCT
TTATTCGTTCTCCCTCTCTTTTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l04.b1 MSMg01no402_l04.b1 CHROMAT_FILE:
MSMg01no402_l04.b1 PHD_FILE: MSMg01no402_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:41 2005
         (237 letters)



>mm_chr16_19018088_19018724
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacttttactgacaaggaaaaaagaaagctaaaaccatgcaacaggctgcagcagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 437 gcacttttactgacaaggaaaaaagaaagctaaaaccatgcaacaggctgcagcagctgt 378

                                                                       
Query: 61  aaataaaaaggctgttcagagaccatcaaattcagctaatacccaaggaaatgcagcatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 377 aaataaaaaggctgttcagagaccatcaaattcagctaatacccaaggaaatgcagcacc 318

                                                                       
Query: 121 aaatcctctggtccctgattacctgaaactaaatcctattccttaacaagttaccagaag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 aaatcctctggtccctgattacctgaaactaaatcctatttcttaacaagttaccagaag 258

                                                                    
Query: 181 agatgagtgagataacgttatctgtgccattaaaccagttccctggttttaaggaat 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agatgagtgagataacgttatctgtgccattaaaccagttccctggttttaaggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)