BAC Information

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BAC

Clone NameMSMg01-402O21
Chromosome16 (Build37)
Map Location 79,147,204 - 79,147,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O21.T7 (MSMg01no402_o21.b1)MSMg01-402O21.TJ (MSMg01no402_o21.g1)
ACCAG501961AG501962
length735751
length of high quality
(start - end)
269 (329 - 597)417 (78 - 494)
definitionCHROMAT_FILE: MSMg01no402_o21.b1 PHD_FILE: MSMg01no402_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:01 2005CHROMAT_FILE: MSMg01no402_o21.g1 PHD_FILE: MSMg01no402_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTTTTGTCGAATATGAACTTTTGAAGTAAGAGCTAATGT
TTTGTTTTTGGTTTTGTTTTTGCTTTTTTTTAAAAAAAATTTCCTCTGTT
TCTGTTATATCTGCCTTTTTTTCCCGATTTTGTTAATTTGGATACCGTCT
CTGTGTCTTTTACTTAGTTTGGCTAAGGGTTTGTCTATGTTGTTGATTTT
CTCATATAACCAGCTCTCGATTTTGTTGATTCTTTGTTCTGTTGTCTTTG
TTTCTAATTGATTGATTCCTTTCTGTAGTTTAGCTATTTCTTGGTGTCTC
CTCCTCTTGGGTGTGCTTGGTTCTTGTAGTTGTGTATGTTAAATGCTTTT
TCTTCTCATTTGCAAAATACTGACTTTAACTTCCTCAATTAATTGTGAGT
CTAAAATAAAATAGTGAACTTAAGAACAGCTCAGCTGGAGATGTTGTTCA
AAGGAATGGGAGGCAGGTCTATCATACATAGATTCCTGGATTGTATTTGA
AGTATTATATAANACTGCATATAATGGTGCAGATCCATAATCTCAGAACA
TATAGATATGAAGGGAATAGGATCAAAATTTCAAGGATATCCTAGCTATA
CTGTGTTTTCAAGGCCAGCCTGAGCTACATAATACTCAGTTACAAACAAC
AAATAATGAAGACTTTAACCTGATTAATGATTATA
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGATTCTTGTATGTTCATG
GGCATGTCTTTCTTTAGGTTTTTGAAGTTTTCTTCTATAATTTTGTTGAA
GATATTTGCTGGCCCTTTAAGTTGAAAATCTTAGTTCTCATCTACTCCTA
TTATCCATAGGTTTGGTCTTCTCATTGTTTCCTGGATTTCCTGGATGTTT
TGAGTTAGGATCTTTTTGCATTTTCCATTTTCTTTGATTGTTGGGCCGAT
GTTCTCTATAGAATCTTCTGCCCCTGAGATTCTCTCTTCCATCTCTTGTA
TTCTGTTGCTGATGCTTGCATCTATGGTTCCAGATTTCTTTCCTAAGGTT
TCTATCTCCAGTGTTGCCTCACTTTGTGTTTTCTTTATTGTGTCTACTTC
CCTTTTTAGGTCTTGGATGGTTTTATTCAATTCCATCACCTGTTTGGTAA
TGTTTTCCTGCAATTCTTTAAGGGATTTTTGTGCTTCCTCTTTAAGGNCT
TCTATCTGGTTTGCAGGGNTCTCCTGGATTTCTTTAAGAAAGATATTAAA
GTTCTTCTTGAGGTCCTCCACCATCATCATGAGATATGCTTTTAAATCCC
GAATATCTTTTTTGGNGGGGTGGGGGGGCCACCACATGGGTGGGGGGGGA
AGTATTGTGTCTTAATATGAGCAAAGCCCCTTTCTTCCTTTCTTAAATAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o21.b1 MSMg01no402_o21.b1 CHROMAT_FILE:
MSMg01no402_o21.b1 PHD_FILE: MSMg01no402_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:01 2005
         (269 letters)



>mm_chr16_79147004_79147672
          Length = 669

 Score =  499 bits (258), Expect = e-146
 Identities = 266/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagctatttcttggtgtctcctcctcttgggtgtgcttggttcttgtagttgtgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagctatttcttggtgtctcctcctcttgggtgtgcttggttcttgtagttgtgtatg 260

                                                                       
Query: 61  ttaaatgctttttcttctcatttgcaaaatactgactttaacttcctcaattaattgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatgctttttcttctcatttgcaaaatactgactttaacttcctcaattaattgtga 320

                                                                       
Query: 121 gtctaaaataaaatagtgaacttaagaacagctcagctggagatgttgttcaaaggaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctaaaataaaatagtgaacttaagaacagctcagctggagatgttgttcaaaggaatg 380

                                                                       
Query: 181 ggaggcaggtctatcatacatagattcctggattgtatttgaagtattatataanactgc 240
           ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 381 ggaggcaggcctatcatacatagattcctgggttgtatttgaagtattatataaaactgc 440

                                        
Query: 241 atataatggtgcagatccataatctcaga 269
           |||||||||||||||||||||||||||||
Sbjct: 441 atataatggtgcagatccataatctcaga 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)