Query= MSMg01no403_b14.b1 MSMg01no403_b14.b1 CHROMAT_FILE:
MSMg01no403_b14.b1 PHD_FILE: MSMg01no403_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:15 2005
(499 letters)
>mm_chr16_56186011_56186909
Length = 899
Score = 845 bits (437), Expect = 0.0
Identities = 484/507 (95%), Gaps = 15/507 (2%)
Strand = Plus / Plus
Query: 5 gaattcagtatta---caatatggtcgacctgtgccccaaagtccctaagcaggataaca 61
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagta--aaaccaatatggtcgacctgtgccccaaagtccctaagcaggataaca 262
Query: 62 gcagtgactgtggagtctatttgttgcagtatgtggagagctttttccaggtgtgtgctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcagtgactgtggagtctatttgttgcagtatgtggagagctttttccaggtgtgtgctg 322
Query: 122 acacagagttttcattcacagttactgatgtgcagttgcagatctctgccagacagacag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acacagagttttcattcacagttactgatgtgcagttgcagatctctgccagacagacag 382
Query: 182 gcagggaaatgtaagtaggcacggacatggcgagatggagaaaagacatagagaccacag 241
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 383 gcagggaaatgtaagtaggcacggacatggcgagatggagagaagacatggagaccacag 442
Query: 242 tgacctaagataggggaatctggaaaggtttttatgatttgattattctgttaaatccaa 301
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 tgacct-agataggggaatctggaaaggttaaaatgatttgattattctgttaaatccaa 501
Query: 302 gaaagccatagatgaacaaaatgggttaatacatgaaatacagaagatatcaaatgaaca 361
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct: 502 gaaagccatagatgaacaaaatgggtgaagacatgaaatacagaagatatcaaaggaaca 561
Query: 362 ttttaaaggtgaaaacatacacaatctatgaagaacttacttggagtttttaatgtagta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttaaaggtgaaaacatacacaatctatgaagaacttacttggagtttttaatgtagta 621
Query: 422 atgcatgcatgtatgcctgtgtgattaggcagctgaagcaagatgatgagaaaa------ 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgcatgcatgtatgcctgtgtgattaggcagctgaagcaagatgatgagaaaacataga 681
Query: 476 ---gctctcactcaaaaggataaaacc 499
||||||||||||||||||||||||
Sbjct: 682 aaagctctcactcaaaaggataaaacc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_b14.g1 MSMg01no403_b14.g1 CHROMAT_FILE:
MSMg01no403_b14.g1 PHD_FILE: MSMg01no403_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:15 2005
(438 letters)
>mm_chr16_56352742_56353579
Length = 838
Score = 638 bits (330), Expect = 0.0
Identities = 397/438 (90%), Gaps = 31/438 (7%)
Strand = Plus / Minus
Query: 1 aacgagtatgccgcagacaagccaagtggattaaacagtgtacaagactcaaggcactct 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aacgagtatgccacagacaagccaagtggattaaacagtgtacaagactcaaggcactct 432
Query: 61 aaagggaagaattttccattgacgttgcttataacagatccctcggacttagaatctcct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 431 aaagggaagaattttccattgacgttgcttataacagatcccttggacttagaatctcct 372
Query: 121 tctccaaaaggctgactttaagccgcctaacctaagagtgaatgtggtgaattaaatcat 180
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 371 tctccaaaaggctgactttaagccacctaacctaacagtgaatgtggtgaattaaatcat 312
Query: 181 tatgaattatcttgttgacactggagttctgtctgcaagaactgtcttaagctgaatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tatgaattatcttgttgacactggagttctgtctgcaagaactgtcttaagctgaatatg 252
Query: 241 tagggaccttgagtaaattttgtatttcaaaggaaaaaatacaaccaagtatttcaaagg 300
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaggaccttgagtaaattttgtatttcaaaggaaaaaa--------------------- 213
Query: 301 aaaaactacaaccaagtaaatgagaaattttaaaaggcagcctcagaacacaacaatgtg 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 ------tacaaccaagtaaatgagaaattttaaaaggcagcctca-tacacaacaatgtg 160
Query: 361 aatgtttataaggcccttgagctgtaggcttaaagatggtgagctttatgcagcggaatt 420
|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 159 aaggtttatgaggcccttgagctgtaggcttaaaggtggtgagctttatgcagtggaa-- 102
Query: 421 gttgtaatatttttcaag 438
|||||||||||||||||
Sbjct: 101 -ttgtaatatttttcaag 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
