BAC Information

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BAC

Clone NameMSMg01-403C14
Chromosome16 (Build37)
Map Location 56,426,203 - 56,426,580
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C14.T7 (MSMg01no403_c14.b1)MSMg01-403C14.TJ (MSMg01no403_c14.g1)
ACCAG502137AG502138
length751752
length of high quality
(start - end)
584 (41 - 624)428 (72 - 499)
definitionCHROMAT_FILE: MSMg01no403_c14.b1 PHD_FILE: MSMg01no403_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:21 2005CHROMAT_FILE: MSMg01no403_c14.g1 PHD_FILE: MSMg01no403_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGGAAACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCAACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCCTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGTTGGGATTGC
AGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATT
GGACATAGTACTACCAGAGGATCCAGCAATACCTCTCTTGGGCATATATC
CAGAAGATGCCCCAACGGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AAATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATT
AAAAAGAATGAATTTATGAAATTTCTAGGCAAATGGATGGACCTGGAGGG
CATCATCCTGAGGGAGGTAACCCAATCACAAAGGAACTCACACAATATGT
ACTCACTGATAAATGGATATTAGTCCAGAAACTTAGAATACCCATAATCA
ACCTTTTATCTCATATCTGAACAATATTCCACTAGGGATTAAGTTTCTAA
TACTGAAGATGTCTAATACATCAACTTTTANGTACACATTCCAGTAATAA
N
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCCCAAGGATTGGTTTGTTTATCTAGTT
CTCCACTCTAAATTTCTGATTCTCAGAATCCTCAGAGATAATCAACTTAT
ATTGCTGTTAGTCACTGAATTTGTGGTTATCTGTTATGGTAACAAAAGGA
AACCAATGCAATGCTTCAACTAGAGATAGGGAGAGGGGAGAAAGAGGGAT
GGAGAGAGATTTAGTATATAAACTTAGTGAGCCAATACTAGCATAACATA
CACCCACTGATACCTGTTAAGGCACCATTCAGAAGGTAGAGATAGCTCTA
TTTTAGAATTTACTTCTATAAGCACTAAGATAACAGATGAAAAGAAATAT
GGGAAATACTAAATATATAAAAACTAAAGCTACAAATTTATATGCATATA
AAGTATATAAAGATATATAAGCTATTTTATATCGATATAATAATGTGTTT
ACAGCGTATCATTATTTGTTCATAACATATAAGCTTAGAACAACTAACAA
TAATGGGGAAATGTTTACTCTTGCATGATCCCAAAAATGTCCTTATTATA
ATATTTATTGACCNCCCATGGCATACCTTTATAAATACCTTCTCTAATAT
GATAAATATAAGGATATCCTGCGTGTTCCTTCCGCACCGAAGATTGCCTT
CCCGCTCTTTTACGATTGCCAAGACTGCCTCCTTTTTGTTATTAATTTTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c14.g1 MSMg01no403_c14.g1 CHROMAT_FILE:
MSMg01no403_c14.g1 PHD_FILE: MSMg01no403_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:21 2005
         (428 letters)



>mm_chr16_56425953_56426780
          Length = 828

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 51  ctcagaatcctcagagataatcaacttatattgctgttagtcactgaatttgtggttatc 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctcagaatcctcagagataatcaacttatattgctgttagtcactgaatttgtggttatc 310

                                                                       
Query: 111 tgttatggtaacaaaaggaaaccaatgcaatgcttcaactagagatagggagaggggaga 170
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 311 tgttatggtaacaaaaggaaaccaatacaatgcttcaactagagatagggagaggggaga 370

                                                                       
Query: 171 aagagggatggagagagatttagtatataaacttagtgagccaatactagcataacatac 230
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 aagagggatggagagagatttagtatataaacttagtgaaccaatactagcataacatac 430

                                                                       
Query: 231 acccactgatacctgttaaggcaccattcagaaggtagagatagctctattttagaattt 290
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acccactgatacctgctaaggcaccattcagaaggtagagatagctctattttagaattt 490

                                                                       
Query: 291 acttctataagcactaagataacagatgaaaagaaatatgggaaatactaaatatataaa 350
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 491 acttctataagcactaagataacagatgaaaggaaatatgggaaatactaaatatataaa 550

                                                                       
Query: 351 aactaaagctacaaatttatatgcatataaagtatataaagatatataagctattttata 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aactaaagctacaaatttatatgcatataaagtatataaagatatataagctattttata 610

                             
Query: 411 tcgatataataatgtgtt 428
           ||||||||||||||||||
Sbjct: 611 tcgatataataatgtgtt 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)