BAC Information

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BAC

Clone NameMSMg01-403I19
Chromosome16 (Build37)
Map Location 24,546,046 - 24,546,289
singlet/doubletsinglet
Overlap geneLpp
Upstream geneRtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403I19.T7 (MSMg01no403_i19.b1)MSMg01-403I19.TJ (MSMg01no403_i19.g1)
ACCAG502434AG502435
length790770
length of high quality
(start - end)
244 (62 - 305)417 (68 - 484)
definitionCHROMAT_FILE: MSMg01no403_i19.b1 PHD_FILE: MSMg01no403_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:53 2005CHROMAT_FILE: MSMg01no403_i19.g1 PHD_FILE: MSMg01no403_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAAACAATCCGCGGAATTCAGTTTGT
TTCTGAAAGACTTTATAAAATGGGGAGACTTGAATGTGAAATATTTACTT
CCTCATTTAAACAAATCCTTTCCCAAATGCCAATAAACGTCCTAACCACC
TTCTTAAATACAAGTATAAATATATACATAAAAGATATGTTATGCCGGGC
ATGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCTTAGGCAGGCAG
ATTTCTGAGTTTGAGGCCAGCATGGTCTACAGAGTGACAAAAACAAAAAC
AAAAATCTACTTCTTAAAAACAACAACAACAAAGATTTGTTATTATATAA
ATTGTATGCAACATTATATGTAAAATATATTTATAGTTTTATATATGGCT
TTATTTATATGTGTGCACACATATATATGTACGTATATGTGTGTGTATAT
ATCGCGCTATTCCTCCCCCAAATTTTACTCCCTCCTCCTTACCCACCACA
TATCTCCTTTCTTCAATTCTTTATTTCATTCCTCCATAAAATTTGCCTTT
TACATCCCTTCCCTATTACCTTTCCCTACTCCTTCATTTCTATTCAAACT
CCTATCTTGTTCCCACTACACCTGTACACTACCCCTTCTACCATTTTTTT
TTTATTTTTTCACCTTTCCCATTATTTCTCTCTCTTTTTCTTCTCTTCTC
CTTTTCCTTTTCTCCACTCATTTTACCCTCCCTTTTTCTCCCCTGTCCAT
TTTCCTCCTCTTCCCTTACACCCTCTTATTCTCATTTACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTG
GCGGTTCCTCTTAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACTGAAAATGTGGTACA
TCTACACCACGGAGTACTACTCACCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGACGGACCTGGAGGGCATCCTCCTGAGCGAGGGAAC
ACATTCTTCAAGGAACTCCCCAATACGTACTCACTGATAATTGGATATTT
GCCCCATAACTATGATATCCCCAGAATTAGATACAATTTTCTTTTTATCT
TGAACCTCCTTAAAAAGTAAAACTGAATTGCGCGATTTATGCTCCTTTCC
CATAAATTTGGAACAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_i19.b1 MSMg01no403_i19.b1 CHROMAT_FILE:
MSMg01no403_i19.b1 PHD_FILE: MSMg01no403_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:53 2005
         (244 letters)



>mm_chr16_24545958_24546601
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 237/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataaaatggggagacttgaatgtgaaatatttacttcctcatttaaacaaatccttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 332 tttataaaatggggagacttgaatgtgaaatatttacttcctcatttaaataaatccttt 273

                                                                       
Query: 61  cccaaatgccaataaacgtcctaaccaccttcttaaatacaagtataaatatatacataa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cccaaatgccaataaaagtcctaaccaccttcttaaatacaagtataaatatatacataa 213

                                                                       
Query: 121 aagatatgttatgccgggcatggtggtgcacgcctttaatcccagcacttgggaggctta 180
           |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  |
Sbjct: 212 aagatacgttatgccgggcatgatggtgcacgcctttaatcccagcacttgggaggcaga 153

                                                                       
Query: 181 ggcaggcagatttctgagtttgaggccagcatggtctacagagtgacaaaaacaaaaaca 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 152 ggcaggcagatttctgagtttgaggccagcctggtctacagagtgacaaaaacaaaaaca 93

               
Query: 241 aaaa 244
           ||||
Sbjct: 92  aaaa 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)