Query= MSMg01no403_l09.b1 MSMg01no403_l09.b1 CHROMAT_FILE:
MSMg01no403_l09.b1 PHD_FILE: MSMg01no403_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:06 2005
(659 letters)
>mm_chr16_60834557_60835616
Length = 1060
Score = 1151 bits (595), Expect = 0.0
Identities = 641/657 (97%), Gaps = 3/657 (0%)
Strand = Plus / Plus
Query: 5 gaattctggtttagttgggagcaagtaccaagtgttgaagggtcaggcatttgtcaggag 64
|||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctggtctagttgggagcaagtaacaagtgttggagggtcaggcatttgtcaggag 264
Query: 65 tcttagtgtcatagcttggttaggtgaaggccttcatgtggctatctgtaatgaagtagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttagtgtcatagcttggttaggtgaaggccttcatgtggctatctgtaatgaagtagc 324
Query: 125 actctgatattatcttagcttgttcatatttctttatctgggctgtatgtgaatgtacat 184
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||| ||
Sbjct: 325 actctgatattatcttagcttgttcataatt-tttatcggggctgtatgtgaatgtatat 383
Query: 185 ggatgatttttttt--gggttgaaacaagtaatgtataattttggggaagggcgtgagaa 242
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatggttttttttggggggtgaaacaagtaatgtataattttggggaagggcgtgagaa 443
Query: 243 tatctaggaagagaaggctgatgctaagatgccacattagcataaagagtaattccaagt 302
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 444 tatctaggaagagaaggctgatgctaagatgccacattagcataaagcggaattccaagt 503
Query: 303 gatgtgttacatgactgactgacagtggtcaccttagttgagtgtcatggttacgtgatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatgtgttacatgactgactgacagtggtcaccttagttgagtgtcatggttacgtgatg 563
Query: 363 ctgagaaggtacagatgcagtgggggaacagcccaactcctgccatctcaaatctctggg 422
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgagaaggtacagatgcagtgagggaacagcccaactcctgccatctcaaatctctggg 623
Query: 423 atactccaccctcacaagttcttatgatctggtagcatggtccaagtgtcctacaataca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atactccaccctcacaagttcttatgatctggtagcatggtccaagtgtcctacaataca 683
Query: 483 gattgaaacaagatacgaaggcagagatttgaataacacagtatttcagtgttattcagt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gattgaaacaagatacgaaggcagagatttgaataacacagtatttcagtgttattcagt 743
Query: 543 acttgaataacacaatgaacagaaaacaatatgcctacacacatgcccaggccacttcac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acttgaataacacaatgaacagaaaacaatatgcctacacacatgcccaggccacttcac 803
Query: 603 aaaaaccctccaataatataaaagaccaagacaatatgccacccctactaagttaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 aaaaaccctccaataatataaaagaccaagacaatatgccacccctactaaattaaa 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_l09.g1 MSMg01no403_l09.g1 CHROMAT_FILE:
MSMg01no403_l09.g1 PHD_FILE: MSMg01no403_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:06 2005
(572 letters)
>mm_chr16_61030793_61031765
Length = 973
Score = 938 bits (485), Expect = 0.0
Identities = 541/573 (94%), Gaps = 24/573 (4%)
Strand = Plus / Minus
Query: 1 catacagtagtaactggtttggaatctattgtttgttacctgcttgtatatttcaataaa 60
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 catacagtagtaactgctatggaatctattgtttgttacctgcttgtatatttcaataaa 851
Query: 61 acctatagataccatttttggcacggaattacatgttatttgtttaacttatactgttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 acctatagataccatttttggcacggaattacatgttatttgtttaacttatactgttag 791
Query: 121 taaatgagcataaaattgactaatagttaataagagagagagagagagagagagagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 taaatgagcataaaattgactaatagttaataagagagagagagagagagagagagagag 731
Query: 181 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 240
||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agagagagagagaga--gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 673
Query: 241 atatttaaagaaagaaagaaagaaagaaagaaagaaagaaagaaactggacttaacttca 300
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 672 a--------------------gaaagaaagaaagaaagaaagaaactggacttaacttca 633
Query: 301 ctaaaataccttgtggttttcataccccactcaatgttaaaataagtagatattaattta 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctaaaataccttgtggttttcttaccccactcaatgttaaaataagtagatattaattta 573
Query: 361 taaactttcttcaacaaataattactgttttgtcattttttt-cttattggaaatagtat 419
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 572 taaactttcttccacaaataattactgttttgtcattttttttcttattggaaatagtat 513
Query: 420 agaaaatgctcttgtttgaattattcctttaaaatatatttatttatattgttagttatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agaaaatgctcttgtttgaattattcctttaaaatatatttatttatattgttagttatt 453
Query: 480 gtagtatgctatctacagttacaactagatgaggataaatgactattgccccttataatt 539
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 452 gt-gtatgctatctacagttacaactagatgaggataaacgactattgccccttataatt 394
Query: 540 tcacatatgtctgaaatccatggtaagtaacat 572
|||||||||||||||||||||||||||||||||
Sbjct: 393 tcacatatgtctgaaatccatggtaagtaacat 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 40
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
