BAC Information

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BAC

Clone NameMSMg01-403L22
Chromosome16 (Build37)
Map Location 63,566,262 - 63,757,272
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403L22.T7 (MSMg01no403_l22.b1)MSMg01-403L22.TJ (MSMg01no403_l22.g1)
ACCAG502583AG502584
length821804
length of high quality
(start - end)		441 (41 - 481)355 (69 - 423)
definitionCHROMAT_FILE: MSMg01no403_l22.b1 PHD_FILE: MSMg01no403_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:09 2005CHROMAT_FILE: MSMg01no403_l22.g1 PHD_FILE: MSMg01no403_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,566,262 - 63,566,698)(63,756,921 - 63,757,272)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCCCAAGTCAAAGGAAAGACAAGCAAACGCGGTTTCTCCAGTTCTGAG
AAGTAGAATTTCTGAGAACACAGATCAAGAGGGAGCAGGGAAACATGCAT
TGTGGAGGGAGAGCAGCATGCAGATCCAATGTGTCACCTTGCAGCCGCGC
TGGTGATGATCTTCAGACTGCCTGGATTCCGGATGAGCTTGTCCAGAATG
CTGACGATCTGCTCGAACTTGGGTCTGTTGTTCCTGTCTTTCTGCCAGCA
GTCCAACATCAACTGATACAAGGCAGCTGGGCAATCCATGGGAGGTGGCA
GGCGATAGCCCTCATCCACAGCCTTAATTACCTACAAGAGAAGCAGCGTT
TCCGGGAAAGGAAGACATGAGACTCGTTGGACTTTTCAAATCACGCTGAT
TGGAACATTTTAAACATTGTTTTAAATTGCCCCAGAAAATACATAACCAA
TTATTAATGCCTGAGAATATTATATTAAAGGTTTAATGAGAGATGTAACT
GTGTGTTTATCTTTTTGCAATCACGGGGAAAAAAAAGTCCTCTACGAAAG
GGAAATTGCTGCTCCCTTAAAAAGACAAATTCCGACCATCCCCTGTTGTT
TCCCGTTTTCTTTTACCCCCTTTTTCGAGTCGTAAACCCCGAGTTTTCTT
GTCTCTTGCCGCTTTCCGGCCCTCTTTGTCTTCACACCCACTTTTTCTTC
CTCTCTTTCCCTTTTTTTCTTCCCTGCTGCCCCCTTATTATTCTTTTTCT
CCCCCTTCACACTTTTCTCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACAAAGTTTTTTTCGTGTCTAGAGACCAG
TCATTCATGAATAAGTAGTGAATCTTATTTGTGTAGGAAAATGGATTCAT
CCTTTTCCCTATGATTTCAAGAATCCTGATGTTATTCTTATTTATTTTAA
CTCTTCAGGAAAATTTACTGTAGGAATTCATAGTGGGGATATCCCAGAAC
ATGATGGCTATTATTTGGGGCAGTTTATTTTTAATGTCCCATGTCCAAGA
ATGACTAACTCTTGTTTAAGCTGAAAAGGTCAAATGACTTAAGCTTCCAA
CAATTTATTTAGCAAATTTCACATTTGCTTTCAGCACTGTGGTTCCTTTC
ACAAAGTACGAATATGTTCGGTCTGTAAGCAAAGTGAATTTACCAGGTTA
ATTATAGTGTATTCTGCATAGCACAGTCATTTTGCCTCAAGTTCCCTATT
ATGTTCGGCGTGTGTGATATCATTGTCATTGCATTTGTCTGCGCTTTCAC
CCCTCCTTTTTTCCCCCCTCACGTTCGTCCTTTTTTTTTTCCCCCTTCTT
CCATTGTCCCCTCTTTTTTTTTTCATTCCCTCCCCCCTTGCCCTCCCCCC
CTTTACCCCCCCTTTTTTTCGTTTTTTTCTCCCCCCCTTTCTTTTTCCCT
TTTTCTCCCCTCTCTTTTTCCCTTCCTCTCCATCTTTCCCCCCCTTCCCT
TTCCCCCTTTTTTTTTCCCTCTCTTTCACCCCTATTTCTCTCTTTCTCCT
TCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_l22.b1 MSMg01no403_l22.b1 CHROMAT_FILE:
MSMg01no403_l22.b1 PHD_FILE: MSMg01no403_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
         (441 letters)



>mm_chr16_63566058_63566898
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcccaagtcaaaggaaagacaagcaaacgcggtttctccagttctgagaagt 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattctttcccaagtcaaaggaaagacaagcaaatgcggtttctccagttctgagaagt 264

                                                                       
Query: 65  agaatttctgagaacacagatcaagagggagcagggaaacatgcattgtggagggagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatttctgagaacacagatcaagagggagcagggaaacatgcattgtggagggagagc 324

                                                                       
Query: 125 agcatgcagatccaatgtgtcaccttgcagccgcgctggtgatgatcttcagactgcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcatgcagatccaatgtgtcaccttgcagccgcgctggtgatgatcttcagactgcctg 384

                                                                       
Query: 185 gattccggatgagcttgtccagaatgctgacgatctgctcgaacttgggtctgttgttcc 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattccggatgagtttgtccagaatgctgacgatctgctcgaacttgggtctgttgttcc 444

                                                                       
Query: 245 tgtctttctgccagcagtccaacatcaactgatacaaggcagctgggcaatccatgggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtctttctgccagcagtccaacatcaactgatacaaggcagctgggcaatccatgggag 504

                                                                       
Query: 305 gtggcaggcgatagccctcatccacagccttaattacctacaagagaagcagcgtttccg 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 gtggcaggcgatagccctcatccacagccttaattacctacgagagaagcagcgtttccg 564

                                                                       
Query: 365 ggaaaggaagacatgagactcgttggacttttcaaatcacgctgattggaacattttaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaaggaagacatgagactcgttggacttttcaaatcacgctgattggaacattttaaa 624

                            
Query: 425 cattgttttaaattgcc 441
           |||||||||||||||||
Sbjct: 625 cattgttttaaattgcc 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_l22.g1 MSMg01no403_l22.g1 CHROMAT_FILE:
MSMg01no403_l22.g1 PHD_FILE: MSMg01no403_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
         (355 letters)



>mm_chr16_63756721_63757475
          Length = 755

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacaaagtttttttcgtgtctagagaccagtcattcatgaataagtagtgaatcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agaacaaagtttttttcgtgtctagagaccagtcattcatgaataagtagtgaatcttat 493

                                                                       
Query: 61  ttgtgtaggaaaatggattcatccttttccctatgatttcaagaatcctgatgttattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgtgtaggaaaatggattcatccttttccctatgatttcaagaatcctgatgttattct 433

                                                                       
Query: 121 tatttattttaactcttcaggaaaatttactgtaggaattcatagtggggatatcccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatttattttaactcttcaggaaaatttactgtaggaattcatagtggggatatcccaga 373

                                                                       
Query: 181 acatgatggctattatttggggcagtttatttttaatgtcccatgtccaagaatgactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acatgatggctattatttggggcagtttatttttaatgtcccatgtccaagaatgactaa 313

                                                                       
Query: 241 ctcttgtttaagctgaaaaggtcaaatgacttaagcttccaacaatttatttagcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctcttgtttaagctgaaaaggtcaaatgacttaagcttccaacaatttatttagcaaatt 253

                                                               
Query: 301 tcacatttgctttcagcactgtggttcctttcacaaagtacgaatatgttcg 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcacatttgctttcagcactgtggttcctttcacaaagtacgaatatgttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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