Query= MSMg01no404_h23.b1 MSMg01no404_h23.b1 CHROMAT_FILE:
MSMg01no404_h23.b1 PHD_FILE: MSMg01no404_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:11 2005
(464 letters)
>mm_chr16_30834313_30835176
Length = 864
Score = 774 bits (400), Expect = 0.0
Identities = 430/446 (96%), Gaps = 10/446 (2%)
Strand = Plus / Minus
Query: 5 ggaattctcattcacattgccttaaactttcagaaacgggctatggaccaacaatttttc 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaattctcattcacaaggccttaaactttcagaaacgggctatggaccaacaatttttc 387
Query: 65 caggaatctcatgagaaaccctacttacagtaagagatccatcctaaatttccatgcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caggaatctcatgagaaaccctacttacagtaagagatccatcctaaatttccatgcaat 327
Query: 125 ccaagtggatccctgatttagatggtcagatggtcagattataatcccacccaaagcagg 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccaagtggatccctgttttagatggtcagatggtcagattataatcccacccaaagcagg 267
Query: 185 gctagagccaccctataatctcatttagcaacatgagaaggaaaagaagagctttttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctagagccaccctataatctcatttagcaacatgagaaggaaaagaagagctttttttt 207
Query: 245 ttttttt----------ctttttcgagacagggtttctctgtatagccctggctgtcctg 294
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttttttttttttttttgctttttcgagacagggtttctctgtatagccctggctgtcctg 147
Query: 295 gaactcactttgtagaccaggctggactcgaactcagaaatctgcctgcccctgcctccc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaactcactttgtagaccaggctggactcgaactcagaaatctgcctgcccctgcctccc 87
Query: 355 aagtgctgggattaaaggcgtgtgccaccactgcccagcaaagagctccttgagaatctt 414
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct: 86 aagtgctgggattaaaggcgtgcgtcaccactgcccagcaaagagctccttgacaatctt 27
Query: 415 ttgagatgtaacttgagagccaacaa 440
||||||||||||||||||||||||||
Sbjct: 26 ttgagatgtaacttgagagccaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_h23.g1 MSMg01no404_h23.g1 CHROMAT_FILE:
MSMg01no404_h23.g1 PHD_FILE: MSMg01no404_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:11 2005
(506 letters)
>mm_chr16_30641907_30642812
Length = 906
Score = 872 bits (451), Expect = 0.0
Identities = 493/513 (96%), Gaps = 13/513 (2%)
Strand = Plus / Plus
Query: 1 aatggcctcctctggcttctaagggcaccaggcatgcacatggtgtatatacatatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggcctcctctggcttctaagggcaccaggcatgcacatggtgtatatacatatatac 260
Query: 61 atgtaggcaaaacactcagacacataaaataataataattaaagaaaatctgaaataacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaggcaaaacactcagacacataaaataataataattaaagaaaatctgaaataacg 320
Query: 121 tgtaaaagttcccctggaggctggagagatagctcatgtgttaagagcttagtggaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgtaaaagttcccctggaggctggagagatagctcatgtgttaagagcttagtggaaggc 380
Query: 181 attgctgaaattggtaaagtgctggcctttaatcccagcactcagcaggcagaagcaggc 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 attgctgaaattggtaaagtgctgg----taatcccagcactcagcaggcagaagcaggc 436
Query: 241 ggatt-ctgagtttgataccagcctgatctacacagtgggttccagaatagccagggcta 299
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 437 ggatttctgagtttgagaccagcctgatctacacagtgagttccagaatagccagggcta 496
Query: 300 cacagagaaacccagtcttaaaaaaaaaaaaacaacagccaacctaccagcaaaccaaaa 359
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 cacagagaaactcagtcttaaaaaaaaaaa--caacagccaacctaccagcaaaccaaaa 554
Query: 360 caaagcacaaaggacctgaactgaattccacagtacccacctggcagtgcataaccatcc 419
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 555 cagagcacaaaggacctgaactgaattccacagtacccacgtggcagtgcataaccatcc 614
Query: 420 ccagtcccaggccatccactgccctcttctggcctgcagaggtactgcacacatatggtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccagtcccaggccatccactgccctcttctggcctgcagaggtactgcacacatatggtg 674
Query: 480 cacacacat------gcaggcaaaacaaccacc 506
|||||||| ||||||||||||||||||
Sbjct: 675 cacacacacacacacgcaggcaaaacaaccacc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
