Query= MSMg01no405_b15.b1 MSMg01no405_b15.b1 CHROMAT_FILE:
MSMg01no405_b15.b1 PHD_FILE: MSMg01no405_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:59 2005
(544 letters)
>mm_chr16_33368923_33369867
Length = 945
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 6 gaattctcagtgtactgattattcttagcaccagtccattctccgac-catagggagcac 64
|||||||||||| | |||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 206 gaattctcagtggaatgattattctcagcaccagtccattctccgacacacagggagcac 265
Query: 65 tcagggacgactcctgagtgggggacagatgtgagtcttgatgctcacccaaggagcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagggacgactcctgagtgggggacagatgtgagtcttgatgctcacccaaggagcctt 325
Query: 125 ggaaaaatggagggtggtctccagtgccagtgtattgtgctgtgtggccttatccctcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaaaaatggagggtggtctccagtgccagtgtattgtgctgtgtggccttatccctcct 385
Query: 185 ttctgcttgaacagaggtcaggaatggagtaaagtgtggatctgcagcctaggaggctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttctgcttgaacagaggtcaggaatggagtaaagtgtggatctgcagcctaggaggctgt 445
Query: 245 gagtttctccgtatgcaagcctgccctggcagagaaggggagggcacagcagatatgtgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagtttctccgtatgcaagcctgccctggcagagaaggggagggcacagcagatatgtgg 505
Query: 305 acagtctctgaagtctctgcagtcctcttgggtgcacagaagctatcaggcaaatatcac 364
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 acagtctctgaattctctgcagtcctcttgggtgcatagaagctatcaggcaaatatcac 565
Query: 365 acatttggttaaatagtaaagccaatacttcttgtatattttcagtacatttaatgttac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acatttggttaaatagtaaagccaatacttcttgtatattttcagtacatttaatgttac 625
Query: 425 catatatatttttatattgtatatagtgttatatacatatactaaatatatagcatatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catatatatttttatattgtatatagtgttatatacatatactaaatatatagcatatat 685
Query: 485 aatatatacataatacattatatatgtatatataaatcagacttttataccattattccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatatatacataatacattatatatgtatatataaatcagacttttataccattattccc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_b15.g1 MSMg01no405_b15.g1 CHROMAT_FILE:
MSMg01no405_b15.g1 PHD_FILE: MSMg01no405_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:59 2005
(496 letters)
>mm_chr16_33480835_33481729
Length = 895
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 aacgctaaggccatgactgtgacatgaacttccccaagaagaagaaccctctattatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aacgctaaggccatgactgtgacatgaacttccccaagaagaagaaccctctattatcag 636
Query: 61 ccagggcagcaccttgcagagagactaggcagtgagacccagcactttacagacacagag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccagggtagcaccttgcagagagactaggcagtgagacccagcactttacagacacagag 576
Query: 121 gcagtactggtactggccattagtggccacaagtgagccagtggacaagttagctgccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcagtactggtactggccattagtggccacaagtgagccagtggacaagttagctgccat 516
Query: 181 actgtagggctagcacactagctggtgacccttcaaaggccttagtataaaatcatgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 actgtagggctagcacactagctggtgacccttcaaaggccttagtataaaatcatgggt 456
Query: 241 ggtggggatagaagcactaaaccaaagcccatttacctaaattgttgattttttgaagta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agtggggatagaagcactaaaccaaagcccatttacctaaattgttgattttttgaagta 396
Query: 301 aataataaaacttgcacctccaggccttttcttacatgttccaattgtaataggaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 aataataaaacttgcacctccaggccttttcttacatgttccaattgtaatagg-aaaaa 337
Query: 361 aaaaaatctaaacctagtatctgccaaagttttagacttacatttctacatatttcagaa 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaaaatctaagcctagtatctgccaaagttttagacttacatttctacatatttcagaa 277
Query: 421 tatattaatgtaaactcattacccttttatttttttatatcacagcaagaaatagttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tatattaatgtaaactcattacccttttatttttttatatcacagcaagaaatagttata 217
Query: 481 tggttcggggccagcc 496
||||||||||||||||
Sbjct: 216 tggttcggggccagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
