BAC Information

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BAC

Clone NameMSMg01-405C10
Chromosome16 (Build37)
Map Location 90,072,006 - 90,216,786
singlet/doubletdoublet
Overlap geneLOC100040496, LOC640694, LOC100040440
Upstream geneLOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
Downstream geneSod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405C10.T7 (MSMg01no405_c10.b1)MSMg01-405C10.TJ (MSMg01no405_c10.g1)
ACCAG503650AG503651
length754751
length of high quality
(start - end)		504 (48 - 551)435 (79 - 513)
definitionCHROMAT_FILE: MSMg01no405_c10.b1 PHD_FILE: MSMg01no405_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:03 2005CHROMAT_FILE: MSMg01no405_c10.g1 PHD_FILE: MSMg01no405_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,216,386 - 90,216,786)(90,072,006 - 90,072,440)
sequence
NNAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCC
GCGGAATTCCACACTTGAACTTGCCCTTTGGGACCTTGTAAAAGTATATT
TGTTAAGACAGGATGCTAGGATGTAATTTTGACAATATGACATAGGTTTG
GGAGAGGGCATATGTCATCTAAATGTTTAATGTATTGTATCAGACAATTT
ATCCCAAATTTGGTATTCCAAAGTCCTATGGCTTTGAGCTACCCTGACTT
TTTTTTAAAGATTTATTTATTAATTTTATGTATGTGAGTACACTGTAGCT
GTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAG
GACCTCTGCTTGCTCGCTCCGGTTGGCCCCGCTCACTGAGTCCCTGCTTG
CTCTGGCCCAAAGATTCATTTATTATTATACATAATAAGTACACTGTAGC
TGACTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTACGGGTGGTTG
TGAGCCACCACGTGGTTGCTGAGATTTGAACTCAGGACCTTTGGAACAGC
AGTCAGTGTTCTTATCCACTGAGCCATCTCACCAGCCAGCTACCCTGAGT
CTTACTCTAGTCAGAGACCAGTTATTTTGAGCTGGGGGTGGGAGGGACAT
AAACTGAAATGCTTGTCCCTGGTCCCAACCGGTTCCCCTTGAAAGCATCC
TCCCCTTGAATCCCAGAAACCCTTGTACAGTTTTTGTTCCCCCCCTGTTT
ATTG

NCCGCGATGATAGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTATGCATCAGGTCTATGTT
ACTGTCCAGTCGTGGGGCTACTTCAGTGGTAAATCGTTGCTGGTTTTGGA
GTCTGGCTGTGCATTCCTTCCCTTTATCATCCTCACTGCTTCCTTGGTGC
CTGAAGACTTGGGGACACTAGTCAAACAAGGGTACAGTCCAAAAGCACAG
ACATCTAAGAACACGGGTCAGACTGCTGGATACACGTACTGATTTCCAAC
AGTTACACATGTGCCCTCCCTCTAACCAATCCCTGACACCCCCAAAATCT
CATGTATAAGATGAGGGTAAAGGCGTCAACAGGAAGTGGGGATTGAGCCA
AAAGACACTCCTAAAGAACACGGACCCGTGGGAAGCTTCAGTCATCCCCA
CGATACATCCACTGAGGTCCAGAAACCCAGTGAACCAGGAGTGGATTGTC
TCCAGTCTCCAGTGGACGGTGAAATGGTAAGACAAGAGGGAAAACCCAGA
CGATTGGCAGATTGACGTTGTGACGGCGGTGGTTTTTCCTCACTGTCCAG
TAATGTTCGTCTTTATTTTCTAAGTCTTTCAGCTCCTCCCCCTTCCTTCT
TGTATTCTAGTTCTTGTTTTTCCCCCACTTGTCACCTTCTTCACTTATCA
CTATTATTTATTCTACTTGTTTTTTTTCTCCATTCTCTTGTTCTTGTTCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_c10.b1 MSMg01no405_c10.b1 CHROMAT_FILE:
MSMg01no405_c10.b1 PHD_FILE: MSMg01no405_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:03 2005
         (504 letters)



>mm_chr16_90216386_90217289
          Length = 904

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccacacttgaacttgccctttgggaccttgtaaaagtatatttgttaagacagga 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaattccacacttgaacttgccctttgggaccttgtaaaagtatatttgttaagacagga 342

                                                                       
Query: 67  tgctaggatgtaattttgacaatatgacataggtttgggagagggcatatgtcatctaaa 126
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 341 tgctaggatgtaattttgacaatatgacataggtttgggggagggcatatgtcatctaaa 282

                                                                       
Query: 127 tgtttaatgtattgtatcagacaatttatcccaaatttggtattccaaagtcctatggct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtttaatgtattgtatcagacaatttatcccaaatttggtattccaaagtcctatggct 222

                                                                       
Query: 187 ttgagctaccctgacttttttttaaagatttatttattaattttatgtatgtgagtacac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttgagctaccctgacttttttttaaagatttatttattaattttatgtatgtgagtacac 162

                                                                       
Query: 247 tgtagctgtacagatggttgtgagccttcatgtggttgttgggaattgaatttttaggac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tgtagctgtacagatggttgtgagccttcatgtggttgttgggaattgaatttttaggac 102

                                                                       
Query: 307 ctctgcttgctcgctccggttggccccgctcactgagtccctgcttgctctggcccaaag 366
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 101 ctctgcttgctcgctccggttggccctgctcactgagtccctgcttgctctggcccaaag 42

                                                    
Query: 367 attcatttattattatacataataagtacactgtagctgac 407
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  attcatttattattatacataataagtacactgtagctgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_c10.g1 MSMg01no405_c10.g1 CHROMAT_FILE:
MSMg01no405_c10.g1 PHD_FILE: MSMg01no405_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:03 2005
         (435 letters)



>mm_chr16_90071806_90072640
          Length = 835

 Score =  772 bits (399), Expect = 0.0
 Identities = 426/435 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttatgcatcaggtctatgttactgtccagtcgtggggctacttcagtggtaaatcgtt 60
           ||||||| |||| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 201 acttatgtatcaagtctatgttactgtcgaatcatggggctacttcagtggtaaatcgtt 260

                                                                       
Query: 61  gctggttttggagtctggctgtgcattccttccctttatcatcctcactgcttccttggt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggttttggagtttggctgtgcattccttccctttatcatcctcactgcttccttggt 320

                                                                       
Query: 121 gcctgaagacttggggacactagtcaaacaagggtacagtccaaaagcacagacatctaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgaagacttggggacactaatcaaacaagggtacagtccaaaagcacagacatctaa 380

                                                                       
Query: 181 gaacacgggtcagactgctggatacacgtactgatttccaacagttacacatgtgccctc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gaacacgggtcagactgctggatacaagtactgatttccaacagttacacatgtgccctc 440

                                                                       
Query: 241 cctctaaccaatccctgacacccccaaaatctcatgtataagatgagggtaaaggcgtca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgaaccaatccctgacacccccaaaatctcatgtataagatgagggtaaaggcgtca 500

                                                                       
Query: 301 acaggaagtggggattgagccaaaagacactcctaaagaacacggacccgtgggaagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggaagtggggattgagccaaaagacactcctaaagaacacggacccgtgggaagctt 560

                                                                       
Query: 361 cagtcatccccacgatacatccactgaggtccagaaacccagtgaaccaggagtggattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtcatccccacgatacatccactgaggtccagaaacccagtgaaccaggagtggattg 620

                          
Query: 421 tctccagtctccagt 435
           |||||||||||||||
Sbjct: 621 tctccagtctccagt 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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