BAC Information

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BAC

Clone NameMSMg01-405L17
Chromosome16 (Build37)
Map Location 17,154,824 - 17,155,206
singlet/doubletsinglet
Overlap geneUbe2l3
Upstream geneLOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L17.T7 (MSMg01no405_l17.b1)MSMg01-405L17.TJ (MSMg01no405_l17.g1)
ACCAG504093AG504094
length788803
length of high quality
(start - end)
370 (68 - 437)388 (77 - 464)
definitionCHROMAT_FILE: MSMg01no405_l17.b1 PHD_FILE: MSMg01no405_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:48 2005CHROMAT_FILE: MSMg01no405_l17.g1 PHD_FILE: MSMg01no405_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAGCATCCGCGG
AATTCCAACATTTTCCCTCAAATGGCCAAGAAGCACTTAAAGAAATGTTC
AAAGTAAGGGGCCCTCCCCAGTTGATCACTAATTGAGAAAATGCCTTACA
GCTGGATCTCATGGAGGCATTTCCTAACCTGACGCTCCTTTCTGTGTGAT
AACTACAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTACAAATATA
TACCCAAAAGTCGCCCCACTATACCACAGGGACACATGTTTCACTATGTA
TAGTCTCCCCTCCCCCAGCCTGATTCCTGCTTGCTCAGGGGTGGAGCTTC
CTGCTCATTCGTTCTGCCACGCCCACTGCTGGAACCTGTGGAGCCACACA
CGTGCACCTTTCTACTGGACCAGAGATTATTTGGCGGTAATCGGGTCCCC
TCCCCCTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCCTTGAT
CAGAGTAACTGTCTTGGCTACATTCCTTTCTCTCGCCACCTATCCCCTCT
TCCCTTCCAGGTTTTCCAAATGCCTTTCCAGGCTAGAATCCATTTTGTGC
TCTGCTGGTCTTTCACATACAACTATGTTCATATTTCTTTCTTATTTTCG
CAATAAACATCATGTTTCATTCATTTCTTATAATGGTATACTGAATATTG
TTTGCTTATTTTATTTCACTGTGCATACCAATTTACTCTACTTAACTAAT
GCATATCCCCCCCTGAACATTTTTCCACCCCCCCCCCG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATATACAAACAAATTGCACATAGA
AAGAACTTCAGCACAACAGAAACTAACATATCAGCTGCAGTTCCTGGTTA
GGCTTTCTTTCGATGACTGAGCTTCCAGCTTTCCACCTCTTTCCCACTGC
AGGCATTTCTGTATGGTGAGATAAAGTAGAAACTTATTGTTGGGAATGAC
TCAACTTCTGTCTTCAAGGCACCAGCTGTGTTTTCTCTTAGGCTTTCTTG
TTGTTCTCTACTTGCTGTCACTGCATTGGGAGCATAGTGTTCGTCCTCAG
ATAAGGGACCTTGGAGGGTACCTGATGTCATCATGCTTGGTTCTGAAATT
GGAGGGACAGGCAGCCCCTCTTCCAAAGCCAGCTTCTCAGTGAGTCAAAA
CAGCACATGATAGTTCACCAGTAAAATGTGTGTCCCACCAAGGCGAGGCT
GGGATCTGTTAGCCGCTAATTTGCCATTTGTCTCTTCCTGATTAATGAAC
TTGATTTTTGTCGTTCTTAATTTCTGACTACTTATTTAGCTCCTTTTTTC
CCTTTCATTCTTTTTGCGCGCCCTGTAAATTTAGTTCCACCTGCTATTTG
AGTCCGCCCACAACGGTGGCTTCGTTAGTTACCTCCCTTCTTCTTTCTCC
AGAAACATATTATTCATTGGCACTCGTTTCTTTCACCCTCCCATATTTTT
TATCCGCCCTCGCCTTTTCTTATTTTTTTTCTTCTCTTCCTTCCTCCCTT
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l17.g1 MSMg01no405_l17.g1 CHROMAT_FILE:
MSMg01no405_l17.g1 PHD_FILE: MSMg01no405_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:48 2005
         (388 letters)



>mm_chr16_17154624_17155410
          Length = 787

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatacaaacaaattgcacatagaaagaacttcagcacaacagaaactaacatatcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atatacaaacaaattgcacatagaaagaacttcagcacaacagaaactaacatatcagct 524

                                                                       
Query: 61  gcagttcctggttaggctttctttcgatgactgagcttccagctttccacctctttccca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gcagttcccggttaggctttctttcgatgactgagcttccagctttccacctctttccca 464

                                                                       
Query: 121 ctgcaggcatttctgtatggtgagataaagtagaaacttattgttgggaatgactcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 463 ctgcaggcatttctgtatggtgagataaagtagaaacttattgttgggaatgactcacct 404

                                                                       
Query: 181 tctgtcttcaaggcaccagctgtgttttctcttaggctttcttgttgttctctacttgct 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tctgtcttcaaggcac-agctgtgttttctcttaggctttcttgttgttctctacttgct 345

                                                                       
Query: 241 gtcactgcattgggagcatagtgttcgtcctcagataagggaccttggagggtacctgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtcactgcattgggagcatagtgttcgtcctcagataagggaccttggagggtacctgat 285

                                                                       
Query: 301 gtcatcatgcttggttctgaaattggagggacaggcagcccctcttccaaagccagcttc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 284 gtcatcatgcttggttctgaaattggagggacaggcagcctctcttccaaagccagcttc 225

                                   
Query: 361 tcagtgagtcaaaacagcacatga 384
           |||||||| |||||||||||||||
Sbjct: 224 tcagtgagacaaaacagcacatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 787
Length adjustment: 9
Effective length of query: 379
Effective length of database: 778
Effective search space:   294862
Effective search space used:   294862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)