BAC Information

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BAC

Clone NameMSMg01-405O13
Chromosome16 (Build37)
Map Location 29,233,432 - 29,233,724
singlet/doubletsinglet
Overlap geneAtp13a5
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls
Downstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405O13.T7 (MSMg01no405_o13.b1)MSMg01-405O13.TJ (MSMg01no405_o13.g1)
ACCAG504228AG504229
length727716
length of high quality
(start - end)
289 (337 - 625)205 (334 - 538)
definitionCHROMAT_FILE: MSMg01no405_o13.b1 PHD_FILE: MSMg01no405_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:02 2005CHROMAT_FILE: MSMg01no405_o13.g1 PHD_FILE: MSMg01no405_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAGTAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCAAACG
GAGCCGCNGGAATCCATTTTTTCAAAAATATTACAAANACCGCAAAGNAA
GACAGAAAAAAATTTCATCCTACTTGTGTCAAGAGATTCATGATAGTGTC
ATCTACAGCAGCACAATATGAGTCAAGCACCGTTCTTCAGTACGTATGCT
GCAAACGGAAGAAATGCCGTAGTCTTTAAAGATAATAAGATGACTATAGC
TTTATGTCTTTTACCATCAGCTATCCTACAAGATGTAATTACACAAAAGT
TGTAACGTGACAGAAAATCTAGCTTTAACTAATTATAGTACAAAGCAGGG
ACAGATCGATTCCATTGTTGCTTGGCACGCGTGCATAAGGAAAGAACCAA
AGGCAACTCAAAAGCGTGGGGAAGGAAACAATTTTGAGGACCTAGAGAGA
CTTGGCGAGGATGAGTGCTGCTCTTTCAGAGGGCCTGATGTTGGTATTCA
GCACCCAGATCAGGTAGCTTAACCTTGGGTAATTCCATATCCAGCTCATC
TGATATCTTCCGGCCTTTGCAGATGCTTTCATATACACATACCCCGCCCC
CCCCCACACATATGTTAAAATAAAATTTAAAAATGTATTGTGGTGCTTCA
GACTAATTTTTTTTTTTTTTTATCTTTTGGCACTTTGAATGTGATGTGCT
CGGGATCAGATTATAGTTTCTGTTCTC
CTTTTTTTCCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTCCAATTCCCA
ATCCGGTGACTGTGTTATCTTATGTAGCACAAGGGACTTTGAGGCATGGT
TAAGGAACTTTGGGATAGAGAATTATCCTGGATTATCCTATGGACCCAGT
GTACTCATAAGAATTTTTCTTATACCCCAGAACGAGCCAGGAGAGCCAGA
GTCAAAGAAAAATGTGAAGACAGAATGAGAGGTTGAAGTGCTGCTCTCCT
TACTGAGAGGAGGTCATGAGCTAATTTTTTTTTAGAGTTCTAGAAGGGAA
TGTATGAAATGGTTCTCAACTAAAACCTCCTGAAGAAATACAACCCAGAA
GATTCCTTCATTTTAGCCTATAGCCTGTCTTCTAGAACTATGAATTAATA
AGATTATGTTGAATAAGTTTGTGGCATATTTTAATGTCAATAGACAAGTA
CTTCAAAATGTGTTTGCCTAACCTAACAAAACCATACATGACTATTAATA
ACTAATACAACATACTATTGTTATACCAATAATTAACAATTATTGTTGGC
CATAGCAATACGATTTGGAACATAATTTATGCGTTCGCTGATAGGTAACA
GTACTCCCTGATCCTGCTCCCAGATTGAAAGCCTCTGCTTGCCTTCGTGT
ACTGACCAGTTCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_o13.b1 MSMg01no405_o13.b1 CHROMAT_FILE:
MSMg01no405_o13.b1 PHD_FILE: MSMg01no405_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:02 2005
         (289 letters)



>mm_chr16_29233396_29234084
          Length = 689

 Score =  460 bits (238), Expect = e-134
 Identities = 279/296 (94%), Gaps = 10/296 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacaaagcagggacagatcgattccattgttgcttggcacgcgtgcataaggaaagaa 60
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 329 agtacaaagcagggacagatcgattccattgttgcttgggaaacgtgcataaggaaagaa 270

                                                                       
Query: 61  ccaaaggcaactcaaaagcgtggggaaggaaacaattttgaggacctagagagacttggc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccaaaggcaactcaaaagcatggggaaggaaacaattttgaggacctagagagacttggc 210

                                                                       
Query: 121 gaggatgagtgctgctctttcagagggcctgatgttggtattcagcacccagatcaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaggatgagtgctgctctttcagagggcctgatgttggtattcagcacccagatcaggta 150

                                                                       
Query: 181 gcttaaccttgggtaattccatatccagctcatctgatatcttcc-ggcctttgcagatg 239
           |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 149 gcttaaccttggataattccatatccagctcatctgatatct-cctggcctttgcagatg 91

                                                                   
Query: 240 ctttcatatacacataccccgcccccccccacacatatg------ttaaaataaaa 289
           ||| |||||| |||||||||||||||| | |||||||||      |||||||||||
Sbjct: 90  cttgcatata-acataccccgccccccac-acacatatgcataaattaaaataaaa 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)