BAC Information

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BAC

Clone NameMSMg01-406A03
Chromosome16 (Build37)
Map Location 79,254,104 - 79,254,608
singlet/doubletsinglet
Overlap genenone
Upstream geneCxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406A03.T7 (MSMg01no406_a03.b1)MSMg01-406A03.TJ (MSMg01no406_a03.g1)
ACCAG504304AG504305
length746761
length of high quality
(start - end)
508 (48 - 555)420 (75 - 494)
definitionCHROMAT_FILE: MSMg01no406_a03.b1 PHD_FILE: MSMg01no406_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:10 2005CHROMAT_FILE: MSMg01no406_a03.g1 PHD_FILE: MSMg01no406_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGATAATTACACTGATACTTCTTAGTCTATGTATACATCTAA
CATTCTATAAGTATTAAAACTTCTCTAAAATCAATAAATTTTGCTCACCT
AGAAAAATAATAATATATTATTCACTTTTAGGAAAATGTATCGTAAAAAT
ACAAAGTATTCACTCTTTATTGGTCGCCATGGTGAACAATTTAGCATAAC
AAAACTAGAAAGTGTATTAAACAAATCATTAGTGTGCTGGGCATTTGGCA
GCAGTAACAAGTTCAAGAACCTCTGGGAACAGTGTTGCCTCCGATTTGCT
GTTACTGAGCACAGTGCTGTCAGCACCATACAGTTATATACTTGAGACAT
AGTGAAGAACACAGAGGAACCAGAGAAGAGATGCAGGATTAGCACAGCAA
GGAGGATAGCTAACACTGGAAACATGCTAATGGAATAAGCACCAATTAGT
GCAGAGGAGTAAATCTTGGGGCAGATAACCAACCATATTTCATGACTATT
GATTGATAATAAATTCTGAGTGAATAGGGTTATGTGTCATTGGAAAGTTG
TTATTAATTTAAAGAGCTCAGCAGAAATGCAGTTATATAAAACACAGAGG
AAAAATCATTTTCCCTTGAAGTATATTTTTATAAGAAACTGAATTAATAT
AAAATGATCATCTTGAATACATTGTGAAGGGTTGGGGATAAAAGCT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATAGCTATGAAATCTGCTCTGGCT
TCCATAGGCACCGGTGTGCATATAATGAAAGTACTGTAAAGCAGGCACAC
ACATACAAAAGTCAAAAAAATTGAAACGTAGGATACCCAAGATATAAGAT
ACAATTTGCTAAACGCATGAAACTCAAGAAAAATGAAGACCAAACTGTGG
ACACTTTGCCCCTTCTTAGAATTGGGAACAAAAAACCCATGGAAGGAGTT
ACAGAGACAATGTTTGGAGCTGTTATTAAGGATGGACCATCTAGAGACTG
CCATATCGGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTG
CACACTCTAGCAAGATTTTGCTGAAAGGACCCAGATAGAGCTCTCTCTTG
TAAGAATATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACC
ATATAGGTGCAACAACATTATGACCTAACTAGTACCTCTGAGTTCTTGAC
TCTAGCTGGATATGTATCAAAAGATGTCCTTAACCGTTCATCACCTGGAA
AGATAGGCCCTTTTTCTTTGCCATCCTTATAATGCCCCCTATCATTGGGT
GAACGTCAGATGCCAAATAATAGCGGAATGGCCAGCCCTCACCTCATTAT
TTTACTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_a03.b1 MSMg01no406_a03.b1 CHROMAT_FILE:
MSMg01no406_a03.b1 PHD_FILE: MSMg01no406_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:10 2005
         (508 letters)



>mm_chr16_79253900_79254808
          Length = 909

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagataat-tacactgatacttcttagtctatgtatacatctaacattctataa 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagataatctaaactgatacttcttagtctatgtatacatctaacattctataa 264

                                                                       
Query: 64  gtattaaaacttctctaaaatcaataaattttgctcacctagaaaaataataatatatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtattaaaacttctctaaaatcaataaattttgctcacctagaaaaataataatatatta 324

                                                                       
Query: 124 ttcacttttaggaaaatgtatcgtaaaaatacaaagtattcactctttattggtcgccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcacttttaggaaaatgtatcgtaaaaatacaaagtattcactctttattggtcgccat 384

                                                                       
Query: 184 ggtgaacaatttagcataacaaaactagaaagtgtattaaacaaatcattagtgtgctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ggtgaacaatttagcataacaaaactagaaagtgtattaaacaaatcattaatgtgctgg 444

                                                                       
Query: 244 gcatttggcagcagtaacaagttcaagaacctctgggaacagtgttgcctccgatttgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gcatttggcagcagtaacaagttcaagaacctctgggaacagtgttgcctctgatttgct 504

                                                                       
Query: 304 gttactgagcacagtgctgtcagcaccatacagttatatacttgagacatagtgaagaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttactgagcacagtgctgtcagcaccatacagttatatacttgagacatagtgaagaac 564

                                                                       
Query: 364 acagaggaaccagagaagagatgcaggattagcacagcaaggaggatagctaacactgga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagaggaaccagagaagagatgcaggattagcacagcaaggaggatagctaacactgga 624

                                                                       
Query: 424 aacatgctaatggaataagcaccaattagtgcagaggagtaaatcttggggcagataacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 aacatgctaatggaataagcaccaattagtgcagaggagtaaatcttggggcagataact 684

                                    
Query: 484 aaccatatttcatgactattgattg 508
           |||||||||||||||||||||||||
Sbjct: 685 aaccatatttcatgactattgattg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)