Query= MSMg01no406_c20.b1 MSMg01no406_c20.b1 CHROMAT_FILE:
MSMg01no406_c20.b1 PHD_FILE: MSMg01no406_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:24 2005
(536 letters)
>mm_chr16_84873381_84874318
Length = 938
Score = 967 bits (500), Expect = 0.0
Identities = 528/538 (98%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 1 ctttaaagacttgtcacccccaccccacccctgaagcttacgggtaaacaacaacaaagg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 738 ctttaaagacttgtcacccccaccccacccctgaaacttacgggtaaacaacaacaaagg 679
Query: 61 aaacgaagttttgtcatactgaaaacttacttcttaaaaacaattttctttcaattttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaacgaagttttgtcatactgaaaacttacttcttaaaaacaattttctttcaattttga 619
Query: 121 tctagacatctccacacatacccaatcccaaaatctctgatgagagtggaggtgactgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctagacatctccacacatacccaatcccaaaatctctgatgagagtggaggtgactgtt 559
Query: 181 atacaggctgcctccccactcccttgttctctaagatagagtctcactatgtaatccttg 240
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 atacaggctgcctccctactccctcgttctctaagatagagtctcactatgtaatccttg 499
Query: 241 aactcagccatctgtgactga--ctaagcgctccagaggatcggagaggtgtactaccat 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 498 aactcagccatctgtgactgactctaagcgctccagaggatcggagaggtgtactatcat 439
Query: 299 acttggcgtcattcttaaaagttggctgtatatagtttcctcctgctgatgtgtgcgtgt 358
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 438 acttgacgtcattcttaaaagttggctgtatacagtttcctcctgctgatgtgtgcgtgt 379
Query: 359 gtcaaaagtgagccacttcggtacatacataatactatttctgcctcaaatcaataagta 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 gtcaaaagtgagccacttcggtacatacataatactatttctgtctcaaatcaataagta 319
Query: 419 ccattttgtaaggaatcgaagttttcttctaaatttttacaatggttaaagtgactaggc 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 318 ccattttgtaaggaatcgaagttttcttctaaatttttacaatggttaaagcgactaggc 259
Query: 479 agttttcattggtaaattctatcagagatttaaacattgccagcattaaatgaaagtt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agttttcattggtaaattctatcagagatttaaacattgccagcattaaatgaaagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space: 488128
Effective search space used: 488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_c20.g1 MSMg01no406_c20.g1 CHROMAT_FILE:
MSMg01no406_c20.g1 PHD_FILE: MSMg01no406_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:24 2005
(471 letters)
>mm_chr16_84699144_84700014
Length = 871
Score = 781 bits (404), Expect = 0.0
Identities = 464/504 (92%), Gaps = 36/504 (7%)
Strand = Plus / Plus
Query: 4 gctagcccccggatccactttgcttccttcactgtaggaaaaggtccaagacactgtgac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gctagcccccggatccactttgcttccttcactgtaggaaaaggtccaagacactgtgac 227
Query: 64 aacctgacttctcatgactttaaaaagaagacacgccgggcacctttgatcccagcactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aacctgacttctcatgactttaaaaagaagacacgccgggcacctttgatcccagcactt 287
Query: 124 gggaggcagaggcagacggatttctgagttcgagaccagcctggtctacagagtgagttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gggaggcagaggcagacggatttctgagttcgagaccagcctggtctacagagtgagttc 347
Query: 184 caggtcatccagggcttcacagagaaaccctgtctcgaaaaaccaaaaa-aa-aa-aa-a 239
|||||||||||||||||||||||||||||||| |||||||||||||||| || || || |
Sbjct: 348 caggtcatccagggcttcacagagaaaccctgcctcgaaaaaccaaaaagaagaagaaga 407
Query: 240 a-aa-------------------------------aagaagaagaagaagaagaagaaga 267
| || |||||||||||||||||||||||||
Sbjct: 408 agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga 467
Query: 268 agaagaagaagaagaagaagaagaagaagaagagaagaagtgggcccaaagtagaaactc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agaagaagaagaagaagaagaagaagaagaagagaagaagtgggcccaaagtagaaactc 527
Query: 328 tgcgtcccaaaagctgaaacataaaacaaacaaaggaaattatctccagaaggcagtttg 387
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgcgtcccaaaaactgaaacataaaacaaacaaaggaaattatctccagaaggcagtttg 587
Query: 388 tgtacacaagaatcttaagagaccttggttcaacaagtaccccatggtggtgaacactgt 447
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 588 tgcacacaagaatcttaagagaccttggttcaacaagtaccccatggcggtgaacactgt 647
Query: 448 ctcctgggcagaattctgacctca 471
||||||||||||||||||||||||
Sbjct: 648 ctcctgggcagaattctgacctca 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
