TTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATATTTATCAAATCAGTTATTCACCTAACACATAGGTTC
TCTGCTCTTAGCATACATGGACATAAAAAATGATGGAGTTCTTTTTCTGG
AAAAGAACCTCTCCATTTAGGGGGAAATGCAATAAGTCATGGGAAAACAT
CCCAATGACTCCATATTATACACAAATTATGTCAAATAAATGCAAGAAAA
AAAGTGAGTCAAATGGGTAGCAGGTAAACCAACATGCATCAAACAACACA
ACTGACTTTGTGAGAACGGTGTTTGACCACGAAGTGAATACTTGGTTTCC
TAAGCACAAGCATGGCAAATGTTTTGCACACATATGTTGGCCTTCTTGTC
ATGCAATAGAAAGTAGTGGAAGCTCCCAGTGAAAAGAGGGCCTTGTTACA
GGAACTTCAGAAAAACAACCTTAGCTGTCAGAGGACAGTCTTAGAAATGG
TATTGTTCCAGATATGAAAATAAGTTTCACTAAGGGAAGATAAATATTTT
ACAGAGAGATTAATGAGAGGAATAAGTTCTAGGTCACTTTTATACAGCAT
GGAGACTATAGTTAAAAATAACAATGGATTAAATATCACAAATTGCTATT
AAAAGTTGATCTTAGATGCACTCCGGACATAAAAAATGATGCCTGTGAAA
TGATAGATATATTACCCTTGATGGATGTATATAATAC

NCCCATGCANNNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATGTTTGGAGATATTATGAAAG
GGCAATCTTCACAGTTGGTTAAAATGGAAGATACTGTGATTAATGCCTAA
ATAATTTAAGTTTTGTAANTANGCCATTAACATTGTAANAGACCCAAGAC
TTCCTGCAGAAAAATCCTCTATTANNNNNNNNCTCCCANNNNTATTTANC
CCAANCCCTACTCCCAAANNTGAGCCCAACACCTCCAATCNCAAAAAAAA
AAAAAAAATCTNTCGAAACTCACCGTACAGATGNGTAGTNNNNAGNNNAN
NNNANNTCAAATTTTNACNTCTCTTTGTGGGTTGTTGAAAGGGGNAGGGG
GTTCTGGGNNNNNNNNNNNNNGGGAGGGGAGGNNCCTTTNNNNNNNNNNN
NNNNNNCNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNCNNNN
NNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNTNNNATA
TTTGTGTGGGGTGGTAGGAACTTNNNCATTGGGTNCCTNCTGNNNNNNNN
NNNNNCNTNTNNNNCTTNTTTNTTATTGTGTGGGGAGGGCTTNCCCNCCC
CCCCCCTCCCCTTCTTNNNNTGTGTTAGGAGAGGGGGGAGGGGATGCAAA
NNNNNNNNNNNNNNNNNNNNCNNTCNCNNNCCTNNCTTNCCCCCCCCCNC
CCCCCCCCTCTTCTTGGTGATGAGGGTGTG

Query= MSMg01no406_e15.b1 MSMg01no406_e15.b1 CHROMAT_FILE:
MSMg01no406_e15.b1 PHD_FILE: MSMg01no406_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:33 2005
         (557 letters)



>mm_chr16_26790417_26791373
          Length = 957

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattcacctaacacataggttctctgctcttagcatacatggacataaaaaatgatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttattcacctaacacataggttctctgctcttagcatacatggacataaaaaatgatgga 630

                                                                       
Query: 61  gttctttttctggaaaagaacctctccatttagggggaaatgcaataagtcatgggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gttctttttctggaaaagaacctctccatttagggggaaatgcaataagtcatgggaaaa 570

                                                                       
Query: 121 catcccaatgactccatattatacacaaattatgtcaaataaatgcaagaaaaaaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catcccaatgactccatattatacacaaattatgtcaaataaatgcaagaaaaaaagtga 510

                                                                       
Query: 181 gtcaaatgggtagcaggtaaaccaacatgcatcaaacaacacaactgactttgtgagaac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 509 gtcaaatgggtagcaggtaaaccaacatgcatcaaacaacagaactgactttgtgagaac 450

                                                                       
Query: 241 ggtgtttgaccacgaagtgaatacttggtttcctaagcacaagcatggcaaatgttttgc 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtgcaagaccacgaagtgaatacttggtttcctaagcacaagcatggcaaatgttttgc 390

                                                                       
Query: 301 acacatatgttggccttcttgtcatgcaatagaaagtagtggaagctcccagtgaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acacatatgttggccttcttgtcatgcaatagaaagtagtggaagctcccagtgaaaaga 330

                                                                       
Query: 361 gggccttgttacaggaacttcagaaaaacaaccttagctgtcagaggacagtcttagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gggccttgttacaggaacttcagaaaaacaaccttagctgtcagaggacagtcttagaaa 270

                                                                       
Query: 421 tggtattgttccagatatgaaaataagtttcactaagggaagataaatattttacagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggtattgttccagatatgaaaataagtttcactaagggaagataaatattttacagaga 210

                                                                       
Query: 481 gattaatgagaggaataagttctaggtcacttttatacagcatggagactatagttaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gattaatgagaggaataagttctaggtcacttttatacagcatggagactatagttaaaa 150

                            
Query: 541 ataacaatggattaaat 557
           |||||||||||||||||
Sbjct: 149 ataacaatggattaaat 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)