BAC Information

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BAC

Clone NameMSMg01-406F18
Chromosome16 (Build37)
Map Location 33,947,644 - 33,947,996
singlet/doubletsinglet
Overlap geneItgb5
Upstream geneLrch3, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13
Downstream geneUmps, Kalrn, LOC100043670, Ropn1, Ccdc14, Mylk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406F18.T7 (MSMg01no406_f18.b1)MSMg01-406F18.TJ (MSMg01no406_f18.g1)
ACCAG504573AG504574
length754769
length of high quality
(start - end)
437 (76 - 512)354 (74 - 427)
definitionCHROMAT_FILE: MSMg01no406_f18.b1 PHD_FILE: MSMg01no406_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:38 2005CHROMAT_FILE: MSMg01no406_f18.g1 PHD_FILE: MSMg01no406_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATAATTTGCGGGCGCTATACGAATCACTATTGCGNAGAGGACCG
CGGAATTCAGTAGTTCTCCAGAAACAAGGCTGGACGTCTCAGCTGGTCTT
CAGTGTGCACTGGGATCCTGAAGAAGTTGGCTCTAAGGCTGGTGAAGGAA
TGGACCTTCTAGCAAGGCTAGAAAAAGCAGGCTAAGAGTGAAGCTTCCTT
CCTCTGTGGCTTATGTAGACTTCTGGCAGATGTGAACCTGATTAGAGATG
GGTTTTCCCATCTCAAAAGATCTGGATTAAAGGTGTGTCTTCCCACCTCC
AAGATCCAGATTAGAAGTTTTTCTTCCTACTTCAGATCAGGCATATAATC
TCTCACAGGGGCGCCCTCCATTTGGGGGTTTTAGTTAATTCCAAATGTAG
TCAATTTGACAATCAAGAATAGCCACTGATCGCCGGGCGGTGGTGGCACA
CGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTT
CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACAC
AGAGAAACCCTGTCTCATAAAACCCAAAAAAATAAAAAGAATAGCCACTG
ATCGTCATTATCCAGGCCCTGGTCCGTTTTCCGCGTGCCCCCTAATTTCT
GGTTGTCAGGAGACTAACTGTAAAGTAGATCTCTCGCCAAATCATTTCTT
GTGTGTTTGTTTAAACATTTGGTCCCTCTTAGCCCCTCTCTATAGGTTTC
TTGG
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGACTCTGTCTGTTCCTTGGGGAGA
CCTAGCTCAGCTTTCAGTCTCACTGAGGCAACATGAAGGGGGATGGACAG
AAGGGAGGGAGCAACTTTTCACCTCGGACATAATCAGGATGCTAACGGCT
CTGCCCACCCGTCTCTTGGTCCCTTCCAGAATGTGGAAGTGCCCCCAATG
CCATGACCATCCTGTTGGCTGTGGTTGGCAGCATCCTCCTGATTGGGATG
GCACTCCTGGCCATCTGGAAGCTGCTCGTCACCATCCACGACCGCCGAGA
GTTTGCCAAGTTCCAAAGTGAGCGCTCCAGGGCCCGTTATGAAATGGTAA
GAGGGGGTGGTTAAAAAAGAGGTTGTTGGCCTAAAGCCAGTGTCAAAGGC
CACAATTTATCAATCAAACCAAAAAATTAACTTATACACCTAGGCATGGT
AGTATTTCTCTATAATCCCTTCTGCCTTGCAAGCTGATACCGCATTTTGA
ATTCTCCAGCCAGTCCGCCCCTCCTTCCTTTATCCCCTGTTCTGTAACAC
CATGACCCATACTCTTCATGTATCTTCTTTGTTCTCTCGTCCAGCTTCTT
CTCTGGTCTCCCCCTCCTCGATCTCTCCACCTCCCTTTTTTCCTCCCACT
ACCCCCCTCTACTCCCCTCTTCTTTTTCGCCATAATCCTCTATGTCTTCC
ATTCCTCTGCTTCATGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_f18.g1 MSMg01no406_f18.g1 CHROMAT_FILE:
MSMg01no406_f18.g1 PHD_FILE: MSMg01no406_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:38 2005
         (354 letters)



>mm_chr16_33947444_33948198
          Length = 755

 Score =  652 bits (337), Expect = 0.0
 Identities = 349/353 (98%), Gaps = 1/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgactctgtctgttccttggggagacctagctcagctttcagtctcactgaggcaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgactctgtctgttccttggggagacctagctcagctttcagtctcactgaggcaaca 260

                                                                       
Query: 61  tgaaggggg-atggacagaagggagggagcaacttttcacctcggacataatcaggatgc 119
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgaagggggaatggacagaagggagggagcaacttttcacctcggacataaccaggatgc 320

                                                                       
Query: 120 taacggctctgcccacccgtctcttggtcccttccagaatgtggaagtgcccccaatgcc 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacggctctgcccacccgtctcctggtcccttccagaatgtggaagtgcccccaatgcc 380

                                                                       
Query: 180 atgaccatcctgttggctgtggttggcagcatcctcctgattgggatggcactcctggcc 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaccatcctgctggctgtggttggcagcatcctcctgattgggatggcactcctggcc 440

                                                                       
Query: 240 atctggaagctgctcgtcaccatccacgaccgccgagagtttgccaagttccaaagtgag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctggaagctgctcgtcaccatccacgaccgccgagagtttgccaagttccaaagtgag 500

                                                                
Query: 300 cgctccagggcccgttatgaaatggtaagagggggtggttaaaaaagaggttg 352
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgctccagggcccgttatgaaatggtaagagggggtggttaaaaaagaggttg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 755
Length adjustment: 9
Effective length of query: 345
Effective length of database: 746
Effective search space:   257370
Effective search space used:   257370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)