BAC Information

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BAC

Clone NameMSMg01-406I07
Chromosome16 (Build37)
Map Location 22,068,166 - 22,068,343
singlet/doubletsinglet
Overlap geneIgf2bp2
Upstream geneLOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760
Downstream geneEG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I07.T7 (MSMg01no406_i07.b1)MSMg01-406I07.TJ (MSMg01no406_i07.g1)
ACCAG504695AG504696
length1,067765
length of high quality
(start - end)
---179 (76 - 254)
definitionCHROMAT_FILE: MSMg01no406_i07.b1 PHD_FILE: MSMg01no406_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:51 2005CHROMAT_FILE: MSMg01no406_i07.g1 PHD_FILE: MSMg01no406_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTACCGCATCCGAC
ACCNGGAANNCNNGCACAATTAATCGTCACGGAGGGGNGGNNNNNNNNCG
NACNGANCGAAACAAGACGAAACAAGACGGAACTATTCATATCTCTTCAA
AACAAAACTAAGACAAAACAAACAAAACAAAACAAAACGAGACTAAACGA
AACGGACGGGGCCAATACATAACTACACAGAACAATACAAATCTAAACAA
TACAAAACGATAAAAAGAAAAACAAAAATGGTAATGAAAGGATAGGATTG
TGTTGGGAGGAAGAGAAAAAAGAGGGGGGAGAGGAGAAGAAGGGGAGGGA
GAAACGAAAGACGAAAGAGAAAAGAAGAAGAAAATTATATTTTTTTAATA
AAAAAAAGAGAAAACAAGAGAAGAAGAGAAAAGAAGACGGGAAGGACGAA
AAAAGAGAGAGAACAGACAAACAAGAAAGGAAAAAGAGAAAACGAAGAGA
AGAGAGAAAAAGAGAGGAGGGAGAGGAAAAACAAGAAATAAGAAAATAAA
AAGAGAAGAGAGAGAAGAGAGGAAAGAAAAGAGAGAGAAAAAAAAGAAGA
GAAAGAGGCGAGAAGGAAGAGAAAGAAAGAGAAAGGAAAGTAGGAAGGGA
AGAAAAGAGAAAAACGGGAAGGAAGAAGAAGATAGAAGAAGAAAAGAGAA
GAAGAAGTGAAAGAAGGAGAAAAAGAAAAAGAAGAGAGATAACAAACAAA
GAAGGGAAAGAAAAGAGAGAAGAAGAAGAAGAGATAAATAGAAGCCTGAG
GGAGAAGAAGAAAGAAAGAGAAAAAAAAGAGAGAAAAAGAAGAAAAGAGA
GAAGACGAGAGGGCGAACATAGAAAAAACAGAANAGGAAAAGAGGAAAAA
CGGGAGAAAGCAGAATAGAAGATAAAAATAAATAGAAGAGAGAAACAGAC
GAAGAATAGTAAAAGAAAGGAAGAAAAACAAAACCAATAAGAAAGAGAAA
AGAAACAGAAAAAACATAAATATAGAAGAGAGAGAATACGAAAACAGAAG
AGGATATACAGAGGCGG
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAGCACTGACAGGAGGTGGCCCA
TGGGGACAGGCAGTAACAATCTTACCTTGATGGAGGCACCAGCAAATCGA
GCGAGCTGTTTGATGTGTGCCCCCTTCTTCCCGATGATAGCACCCACAGC
CTGGGTTGGGATGAAGAGACTTACAGTCTCCTGCTCTGGGTACTAGAAAA
GAAACATACTCAGCTATCATTCTGACCTGTCACCTCATGGCCCAGCCAAG
TGCGGTTAACAGACCCAATATTTTTTTGCCTCGCAATCTGGGGAGATGGC
CAAAGTGCCATGTCTGTGTGTGGCCCGTTGATCTATAGATGAATCTGATG
AGTTATGTTGAACCTAAGTATGATTGCTTGATCCTGTAAGGACCTCCGAG
CACCCACCCACCCGTGTTTGTCGTTGTACATGTATCTGTTTGTCCCTGCT
TTCTCTCACTTCAGATCTGATTTATATCCCTCTTGTTTTCTCCTCTCTAT
AATTTATATGGGTTATTCCTGTGCTGCCTCTTTGGTTTTTTTTTCACAAT
CTACGATTTTTTTTTGCAACATTGTCCGCACGCGCTTTTCTATCCCTTCC
TTTTATCAAACATTTTTCTCTTTTTTTTGCCCCCTTTTTTCTCGTACTTT
CTTCCTCTCTCTTGAATTATGTTCTCCTTCTTTTTTTTTTTTTCATCTTT
CTTCTCTCCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i07.g1 MSMg01no406_i07.g1 CHROMAT_FILE:
MSMg01no406_i07.g1 PHD_FILE: MSMg01no406_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:51 2005
         (179 letters)



>mm_chr16_22067966_22068544
          Length = 579

 Score =  344 bits (178), Expect = 2e-99
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagcactgacaggaggtggcccatggggacaggcagtaacaatcttaccttgatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagcactgacaggaggtggcccatggggacaggcagtaacaatcttaccttgatggag 260

                                                                       
Query: 61  gcaccagcaaatcgagcgagctgtttgatgtgtgcccccttcttcccgatgatagcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaccagcaaatcgagcgagctgtttgatgtgtgcccccttcttcccgatgatagcaccc 320

                                                                     
Query: 121 acagcctgggttgggatgaagagacttacagtctcctgctctgggtactagaaaagaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcctgggttgggatgaagagacttacagtctcctgctctgggtactagaaaagaa 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)