BAC Information

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BAC

Clone NameMSMg01-407A07
Chromosome16 (Build37)
Map Location 41,607,641 - 41,607,963
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A07.T7 (MSMg01no407_a07.b1)MSMg01-407A07.TJ (MSMg01no407_a07.g1)
ACCAG505076AG505077
length736748
length of high quality
(start - end)
323 (322 - 644)551 (75 - 625)
definitionCHROMAT_FILE: MSMg01no407_a07.b1 PHD_FILE: MSMg01no407_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:32 2005CHROMAT_FILE: MSMg01no407_a07.g1 PHD_FILE: MSMg01no407_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGGAGGCGCGGA
ATTCAACCCTTGACTTAAAGAATGGAAGACACTTGAAATCTTTATCAATG
ATTCACAAAGAACCTAGGATGTTGTTTGGTAGGTAATATTAGAGGAGGAG
AAGTTTTTCCAGTCTTATTTCTTACTGTGGTAAAGTGCGTAAAACATTAA
GTTTCTGTCTAGTTACTTGTATCCATGTGTTATTTAACCATCACCACTGT
TCATCTCCATAAGCCTTTTAGGCTCTGAAAGTTAAATGCATTATCAATTA
AGTAGCAACTTCATTTTTTTTCTTCTCTCTAACTCTAGCACCTGGGAAGT
ACTGTTCTATGTCTGTCTCCATGAGGACCCAAAATAATTAATATAAGAGA
TACTGATATTCTGTTTTATCTGTGATGAGTTAATTTCTGTTGCATATATC
AACATTCCTTTCTGTTTTAATAAAAATTATTATTATTTTGTTTAGGTATC
ATAATTTGCTTATGTCTTCATCTGTTCAAAAACACTTGTTTTTGAACACT
TTAACTACTTTAAGTAATACTCCTAAGAATATGAATCGTCTTTTTGAAAC
CACGCTTTCAATTCATTTTGAGTATGTATCTGAAAATGGGATTGCTGGTT
CATATGATAATTCTATTTTAAAATTGATGACTTATATCATTTTCCATAGT
AGATATATTATATTAATTCTATAGCACTACATTCCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATTGTGGAACTGTAATCCTGGTCA
ACAGCCCATGGTGATGGAGGTCATAGGCCCTAGGAGAGAGCCTGCTGTTG
TTACTTTGCTCGATGATCATGCTGTCAAATTGCCTTTTAAATGTTTTCTT
AGACATATAGATTGGGATGCTCTTAGCCTTGGGCAGAAAAGGTTCCTTTA
GCAGTGGACAATGGCCAATTCAGAGGTATATAATCAGTCAAACTGCTGAG
AAGAAGAGACCAAGTGCCCAGTACTGTATGTCATATCTTCTCCACCTTCC
CACTTTCCAAGTTTCAGAGACCATCTCAGAAGAGTTGGTAGAAAGAAAGT
AAGGGCTGAAGAAAGGGAAGGAATTGTATGGAATGTTGTTTTCTGCTTGT
GGCATGCCATTTGAACTTGTGATTTCACAGCCCCTCTAGTTACCCGTACA
GAATTCAGCAAGCTTAAAATCTAGCATAGGTGGGGGAGGTACTCTCCAGG
TTCCAGCTCTTATGAAAGAACTATTGGCAGTTGATACCTGTATAGGGAGG
GGACAATCGTTCTGGTTTCAGGGTGTTCTAACTGCCAAGTTTCTCATATG
CTAGTGAATGATCAGACACACACCCACTCAAATATGGGTAAAATTAACTG
GAATTTTCCGGAAAATAAAAAGAAAAGGAAGGCTTGAAATTTATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a07.b1 MSMg01no407_a07.b1 CHROMAT_FILE:
MSMg01no407_a07.b1 PHD_FILE: MSMg01no407_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:32 2005
         (323 letters)



>mm_chr16_41607441_41608163
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctctctaactctagcacctgggaagtactgttctatgtctgtctccatgaggaccca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cttctctctaactctagcacctgggaagtactgttctatgtctgtctccatgaggatcca 260

                                                                       
Query: 61  aaataattaatataagagatactgatattctgttttatctgtgatgagttaatttctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataattaatataagagatactgatattctgttttatctgtgatgagttaatttctgtt 320

                                                                       
Query: 121 gcatatatcaacattcctttctgttttaataaaaattattattattttgtttaggtatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatatatcaacattcctttctgttttaataaaaattattattattttgtttaggtatca 380

                                                                       
Query: 181 taatttgcttatgtcttcatctgttcaaaaacacttgtttttgaacactttaactacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgcttatgtcttcatctgttcaaaaacacttgtttttgaacactttaactacttt 440

                                                                       
Query: 241 aagtaatactcctaagaatatgaatcgtctttttgaaaccacgctttcaattcattttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtaatactcctaagaatatgaatcgtctttttgaaaccacgctttcaattcattttga 500

                                  
Query: 301 gtatgtatctgaaaatgggattg 323
           |||||||||||||||||||||||
Sbjct: 501 gtatgtatctgaaaatgggattg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)