BAC Information

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BAC

Clone NameMSMg01-407A19
Chromosome16 (Build37)
Map Location 59,330,136 - 59,513,516
singlet/doubletdoublet
Overlap geneOlfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340
Downstream geneLOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A19.T7 (MSMg01no407_a19.b1)MSMg01-407A19.TJ (MSMg01no407_a19.g1)
ACCAG505100AG505101
length748753
length of high quality
(start - end)		671 (62 - 732)557 (70 - 626)
definitionCHROMAT_FILE: MSMg01no407_a19.b1 PHD_FILE: MSMg01no407_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:35 2005CHROMAT_FILE: MSMg01no407_a19.g1 PHD_FILE: MSMg01no407_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,330,136 - 59,330,813)(59,512,959 - 59,513,516)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATATTGTACAAAAAAAAAGGGGGGGGCAAAGGTACCTTCTGTGTCTTC
ATTTCAACTAAATTAAAAAAAAAAACTGTTCTGTGAAGTTAGCTCCCTTC
CATCTTTCCTGGGAATGGGAAAGAGGAGTTTTGCTTAGAGTCTTATTGAA
TTCTAAAACATTAGCAAAGAAGCAGGTAAGCCCTGTAATAATTACTAAGT
GTTCCACGGTCTTATAGCTCCCAAGCATTTCACATGAAACACATGCGGTT
GTAGTGGTCGACTCTCCCTCTCGCAATATGCCCTGCAAACCCCTGGAACC
CACTAACCAGGTGAACAAGCAGACATTGATCATCTGAAGCCACACTGTCC
TGTGATCCCAGGGACCACCAATTCATCTTGATTATGAAAATATCCAAAGT
AAAAGTCACAAAGAGAAATTTTACTACATAGCAATCACAGCACAGAGGTT
CATCGCATGGAATCTTACACATTCACATGATGGAGCTCAAATCTTTGGTC
GATAAATACATAGCTGTGAGTCACCTGGCTTTAGAGAAAACGAAGAGAAT
AACAAAATATTTCATTTAGCTTTTCAGGACTCCTGTGTGTCCTACTTGTT
AGATGATCTCCTTAAAAACATATTTACACTCATCACTCTCATGCAATTAT
TGGCACATTAGGACAAATTTTGGGTAATGAAGTGCTTGAACTATATAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGTCTTACAATCCTAGAGGGAGCCGTGCA
GATTAATATTATTCACATGCAGCTAGTGGGCGAAGTGCAGTTACAGTGGG
GGCAGTGTGAGGGCATTCATTGTAGCACTGGGAGATAAAACAGTAGCACA
TTCAAATAATAAAGTGTACAGCATAGAGTTAGCAGAAGGCAGCTGTGTGC
GTGAACACTTTCAACACCAAAGGCAAGAAAAGCAGGCTACCTCAGGAACT
GAGTTTAAATCAGCTGTACTCAATAGATCTCATTTGCTTAAATTTTTGGT
ACACGTTTTGTATATTGTTAAATACTATTCAGTACATGTTGCATTAAAAT
ATTAGGCTTGATAGTTTCATGTTCAAGGACGTTTAAATGCTAGTACTCGT
GACTCGATCATTCAGTGAGCCTAATAAATTTGTACACATGATTTGTCAAT
TAAAGTTAAAAAATACAAATGGGAAATCTTGATATAATACTTGTGGATGT
TGGGTGGATGGTCAAATGTTATGTTATTTGCTCTTTCAGAAATGAATTGT
AACTTATCTAAAAAGGGGGGGGGCGCAGGCATGAAATATTGAGACTTATT
TTACTAAGATATATGGAATGGGGCTCTGTAGGGAAGGGCTCTGTTGAAAT
CCGCCTGGTTGTCTGAAAACTCTCCGCTCAACTCTGAATCTGCCACCGAT
ATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a19.b1 MSMg01no407_a19.b1 CHROMAT_FILE:
MSMg01no407_a19.b1 PHD_FILE: MSMg01no407_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:35 2005
         (671 letters)



>mm_chr16_59329936_59331013
          Length = 1078

 Score = 1257 bits (650), Expect = 0.0
 Identities = 668/678 (98%), Gaps = 8/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaaaaagggggggg----caaaggtaccttctgtgtcttcatttcaactaaattaaaa 57
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaaggggggggggaccaaaggtaccttctgtgtcttcatttcaactaaattaaaa 260

                                                                       
Query: 58  aaaaaaa----ctgttctgtgaagttagctcccttccatctttcctgggaatgggaaaga 113
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaaaactgttctgtgaagttagctcccttccatctttcctgggaatgggaaaga 320

                                                                       
Query: 114 ggagttttgcttagagtcttattgaattctaaaacattagcaaagaagcaggtaagccct 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagttttgcttagagtcttattgaattctaaaacattagcaaagaagcaggtaagccct 380

                                                                       
Query: 174 gtaataattactaagtgttccacggtcttatagctcccaagcatttcacatgaaacacat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaataattactaagtgttccacggtcttatagctcccaagcatttcacatgaaacacat 440

                                                                       
Query: 234 gcggttgtagtggtcgactctccctctcgcaatatgccctgcaaacccctggaacccact 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcggttgtagtggtcgactctccctctcgcaatatgccctgcaaacccctggaacccact 500

                                                                       
Query: 294 aaccaggtgaacaagcagacattgatcatctgaagccacactgtcctgtgatcccaggga 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccaggtgaacaagcagacattgatcatctgaagccacactgtcctgtgatcccaggga 560

                                                                       
Query: 354 ccaccaattcatcttgattatgaaaatatccaaagtaaaagtcacaaagagaaattttac 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaccaattcatcttgattatgaaaatatccaaagtaaaagtcacaaagagaaattttac 620

                                                                       
Query: 414 tacatagcaatcacagcacagaggttcatcgcatggaatcttacacattcacatgatgga 473
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacgtagcaatcacagcacagaggttcatcgcatggaatcttacacattcacatgatgga 680

                                                                       
Query: 474 gctcaaatctttggtcgataaatacatagctgtgagtcacctggctttagagaaaacgaa 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcaaatctttggtcgataaatacatagctgtgagtcacctggctttagagaaaacgaa 740

                                                                       
Query: 534 gagaataacaaaatatttcatttagcttttcaggactcctgtgtgtcctacttgttagat 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagaataacaaaatatttcatttagcttttcaggactcctgtgtgtcctacttgttagat 800

                                                                       
Query: 594 gatctccttaaaaacatatttacactcatcactctcatgcaattattggcacattaggac 653
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatttccttaaaaacatatttacactcatcactctcatgcaattattggcacattaggac 860

                             
Query: 654 aaattttgggtaatgaag 671
           ||||||||||||||||||
Sbjct: 861 aaattttgggtaatgaag 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1078
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1068
Effective search space:   705948
Effective search space used:   705948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_a19.g1 MSMg01no407_a19.g1 CHROMAT_FILE:
MSMg01no407_a19.g1 PHD_FILE: MSMg01no407_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:35 2005
         (557 letters)



>mm_chr16_59512759_59513716
          Length = 958

 Score = 1056 bits (546), Expect = 0.0
 Identities = 555/558 (99%), Gaps = 1/558 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtcttacaatcctagagggagccgtgcagattaatattattcacatgcagctagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 actgtcttacaatcctagagggagccgtgcagattaatattattcacatgcagctagtgg 699

                                                                       
Query: 61  gcgaagtgcagttacagtgggggcagtgtgagggcattcattgtagcactgggagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcgaagtgcagttacagtgggggcagtgtgagggcattcattgtagcactgggagataaa 639

                                                                       
Query: 121 acagtagcacattcaaataataaagtgtacagcatagagttagcagaaggcagctgtgtg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 638 acagtagcacattcaaataataaagtatacagcatagagttagcagaaggcagctgtgtg 579

                                                                       
Query: 181 cgtgaacactttcaacaccaaaggcaagaaaagcaggctacctcaggaactgagtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cgtgaacactttcaacaccaaaggcaagaaaagcaggctacctcaggaactgagtttaaa 519

                                                                       
Query: 241 tcagctgtactcaatagatctcatttgcttaaatttttggtacacgttttgtatattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcagctgtactcaatagatctcatttgcttaaatttttggtacacgttttgtatattgtt 459

                                                                       
Query: 301 aaatactattcagtacatgttgcattaaaatattaggcttgatagtttcatgttcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaatactattcagtacatgttgcattaaaatattaggcttgatagtttcatgttcaagga 399

                                                                       
Query: 361 cgtttaaatgctagtactcgtgactcgatcattcagtgagcctaataaatttgtacacat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 398 cgtttaaatgctagtactcgtgactctatcattcagtgagcctaataaatttgtacacat 339

                                                                       
Query: 421 gatttgtcaattaaagttaaaaaatacaaatgggaaatcttgatataatacttgtggatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatttgtcaattaaagttaaaaaatacaaatgggaaatcttgatataatacttgtggatg 279

                                                                       
Query: 481 ttgggtggatggtcaaatgttatgttatttgctctttcagaaatgaattgtaacttatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttgggtggatggtcaaatgttatgttatttgctctttcagaaatgaattgtaacttatct 219

                             
Query: 541 aaaaaggggg-ggggcgc 557
           |||||||||| |||||||
Sbjct: 218 aaaaagggggaggggcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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