Query= MSMg01no408_c16.b1 MSMg01no408_c16.b1 CHROMAT_FILE:
MSMg01no408_c16.b1 PHD_FILE: MSMg01no408_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:03 2005
(470 letters)
>mm_chr16_51117316_51118185
Length = 870
Score = 748 bits (387), Expect = 0.0
Identities = 444/469 (94%), Gaps = 13/469 (2%)
Strand = Plus / Minus
Query: 4 ggaattcactgcgctaacccaatgggtttgatgcagaaattctctttgtacttagaagca 63
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 473 ggaattcactgcgctaaaacaatggatttgatgcagaaattctctctgtacttagaagca 414
Query: 64 tgaagtgaatgaaatcaaaagaaataagaggaagctggaatctatatatctgggaggcta 123
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 413 tgacgtgaatgaaatcaaaagaaataagaggaagttggaatctatatatctgggaggcta 354
Query: 124 caaacaacccatagcatggaaacatttgatgcaataatagaaggagattaaagagtctga 183
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 353 caaataacccatagcatggaaacatttgatggaataatagaaggagattaaagagtcgga 294
Query: 184 aatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagcttagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagcttagt 234
Query: 244 tttctcatcacaaaaaacccacaaagcattcacacactcacactcacacacacacacaca 303
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 233 tttctcatcacaaaaaacccacaaagcattcacacacacacactcacacacacacagaca 174
Query: 304 cacacacacacacacacacacaca--cgcacacttgtgtgtgtgccttagtgcctttgga 361
|| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 173 ca-a---------acacacacacgtgcgcacacttgtgtgtgtgccttagtgcctttgga 124
Query: 362 aaagttatttctgtccatgttcccactgactttttttctataccctaggataaaaaaatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 123 aaagttatttctgtccatgttcccactgactttttttctataccctaggataaaaaa-tg 65
Query: 422 tgtaaagtatactcacactttatttacttattttcttatttatttttaa 470
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgtaaagtatactcacactttatttacttattttcttatttatttttaa 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_c16.g1 MSMg01no408_c16.g1 CHROMAT_FILE:
MSMg01no408_c16.g1 PHD_FILE: MSMg01no408_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:03 2005
(495 letters)
>mm_chr16_50955888_50956782
Length = 895
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Plus
Query: 4 ttctagtgctatctattttcagttttgtgattagattgtttggagctgtatacaatttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttctagtgctatctattttcagttttgtgattagattgtttggagctgtatacaatttaa 263
Query: 64 ttgtcaaaacttgaccatctaatttgttattgtgcagttcatcaggcaatttgtaagtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtcaaaacttgaccatctaatttgttattgtgcagttcatcaggcaatttgtaagtat 323
Query: 124 taccatgaaaggaattctagccttgcagaaattctcctgaggttgaagtaatctcaggaa 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 taccatgaaaggaattctagccttgcagaaattctcctgaggttgaagtactctcaggaa 383
Query: 184 tataaatgttatacactttctccatagaacagaaagcattgttgtctagggactaaagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataaatgttatacactttctccatagaacagaaagcattgttgtctagggactaaagca 443
Query: 244 tcattgcatagggagaggagtccctgtacagtggcaacaaagcaaaaggagttgcattag 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcattgcatagggagaggagttcctgtacagtggcaacaaagcaaaaggagttgcattag 503
Query: 304 tcaggcatggaagtgcccttctctgacccaacactcaggaggtagaggccaaaggaactc 363
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 tcaagcatggaagtgcccttctctgacccaacacttaggaggtagaggccaaaggaactc 563
Query: 364 tgcaagatataagtcagcctgttcttcctagtaaattctaaactagcagagctgggtagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcaagatataagtcagcctgttcttcctagtaaattctaaactagcagagctgggtagt 623
Query: 424 gagagcccgtctcggaacatgaaagaaaaatataacaacagagataaattgaaataaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagagcccgtctcggaacatgaaagaaaaatataacaacagagataaattgaaataaaac 683
Query: 484 tatcacttagta 495
||||||||||||
Sbjct: 684 tatcacttagta 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
