BAC Information

Click to search

BAC

Clone NameMSMg01-408K24
Chromosome16 (Build37)
Map Location 51,719,169 - 51,719,480
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408K24.T7 (MSMg01no408_k24.b1)MSMg01-408K24.TJ (MSMg01no408_k24.g1)
ACCAG506348AG506349
length791822
length of high quality
(start - end)
314 (42 - 355)88 (74 - 161)
definitionCHROMAT_FILE: MSMg01no408_k24.b1 PHD_FILE: MSMg01no408_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:44 2005CHROMAT_FILE: MSMg01no408_k24.g1 PHD_FILE: MSMg01no408_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGCGGAATTC
TGTGTCTCTCACGTGCTTGCTACTCCAAAGACTTACCCAGGCTTTGTTGT
TAGTGATTGATTCCTGCCCATACCAGTTTGGTTTTTTATTTTTTCTATAT
TTTACTGAATGAACTAGGAGACAGACCATGGTATAAGGATGCTAATTTCC
TAGAGAACTCTGTAGATGCTGTGCCATCAGAGCTAGCTTTAAGTTATCCC
AAGAAGACATCATTGGCAGGCCACTGTGCTTTAAAAGGCTTCCTTTTTCC
CTCTAGACACTTACTTCATTAATGTCCGTGCTTGAAAATGTATCTGGTAT
TTTAATGGGCGGGGGGGGGGGGGGGGGGGGGCGGGGGTGTTGGCGAAAGT
CCTATTATTAAAGAATATTGACATCCAACAGGCAAACATAAACAGAGATT
ATTGGATTCCGCCGTTTACAAACCTATTAAATGGGGTTACCAGGCCCCAC
ACAATCTATTCCCATTAAAGAACTTTATGTTCTGCAATAACCCCATGCCC
ACAATTCTGCGATCTCCATTGGAACTTTACTTAATCAATTCTTTAACCCT
ACACCCCCTCCTCTCCCCTTTTTTTTCGGCGCCTACTANANACCATTACC
TATATTTTACACCTAATTTTCTCTTTTTTCTTTTCCTCTTTCCACCATAT
ATAAAACAACTTAACACAAATGCTGTATTCATCTTTCTCCCCTCTTTAAC
CCACCTCACACACCTCATCTCACAATTTAATGTTTCTTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTTTCTTTATATTATTTATCCTT
CAAAAAACATACACACAGAAGAGTCACAGACAGACAGACACATACACAGA
CAGACAGACACACAGAGACACATACACACACTCTGGGGGTGNTNGTGGCC
CCATAACTANTAGGGCCNGGGNNCCCCCCGGGGGCGTACCGGTCCTGCGG
TCTGGAAGCGNAGATCGAGGGGTCTTTTTGTTTTCTTTTACAAATTTTTT
CTCCCCCCCAAANNNCNACCCTTATTAAAAACTGTTTTTTCCCCCGCGGA
AAAACACACCCCTTTCTTGTGGGNNNTTTTGTCTTCCCCAACGGCGGGGT
TTTCCCCCCAACCCTTTTTAAGGGGGGCCCCCGGCACATTAGGGGGGCCC
CCCCCCCCGGGGGCCGGGGGCCCCCCAAAAAATTTTTTTTTTTTCCCCAA
AAAAAGGGGGGCACTTTCTTCCCNNNNNNAATATGTACAGTAGTAGTAAT
GTCTCCTTTCTTTTTGAGAAAAAAAAAGAAGGCCCCCCCTCTTTTTTTTG
GGTGTGTAAGGAGAGGGGGGNNNNNNCTTTTTTTTTTTCCTCTTTCCCTT
TCCCTCTGTGGTCCGGTGCTTCTGTTCTCTTTTCTTTTTTTTTTTTTCTC
TNTTCNTCNNNTTTNNGTTTTCCCCTTTTTCCCCCTTCTTNNNACCCCCC
TTAACTCCCTTTTTACCACCCTTTCCTCCCTTACCTTCCCTCCCTCTTTT
TTTCTTTTTTTCTTTACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_k24.b1 MSMg01no408_k24.b1 CHROMAT_FILE:
MSMg01no408_k24.b1 PHD_FILE: MSMg01no408_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:44 2005
         (314 letters)



>mm_chr16_51718966_51719680
          Length = 715

 Score =  545 bits (282), Expect = e-159
 Identities = 305/316 (96%), Gaps = 9/316 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgtgtctc----tcacgtgcttgctactccaaagacttacccaggctttgttgt 59
           ||||||||||||||    |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtgtctcaagat---gtgcttgctactccaaagacttacccaggctttgttgt 260

                                                                       
Query: 60  tagtgattgattcctgcccataccagtttggttttttattttttctatattttactgaat 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tagtgattgattcctgcccataccagtttggttttttattttttctatattttactgagt 320

                                                                       
Query: 120 gaactaggagacagaccatggtataaggatgctaatttcctagagaactctgtagatgct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactaggagacagaccatggtataaggatgctaatttcctagagaactctgtagatgct 380

                                                                       
Query: 180 gtgccatcagagctagctttaagttatcccaagaagacatcattggcaggccactgtgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccatcagagctagctttaagttatcccaagaagacatcattggcaggccactgtgct 440

                                                                       
Query: 240 ttaaaaggcttcctttttccctctagacacttacttcattaatgtccgtgcttgaaaatg 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttaaaaggcttcctttttccctctagacacttacttcattaatgtctgtgcttgaaaatg 500

                           
Query: 300 tat-ctggtattttaa 314
           ||| | ||||||||||
Sbjct: 501 tatac-ggtattttaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)