BAC Information

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BAC

Clone NameMSMg01-408N16
Chromosome16 (Build37)
Map Location 85,883,293 - 85,883,708
singlet/doubletsinglet
Overlap geneAdamts5
Upstream geneGm311, App, Cyyr1, LOC100039994, LOC622000, Adamts1
Downstream geneLOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408N16.T7 (MSMg01no408_n16.b1)MSMg01-408N16.TJ (MSMg01no408_n16.g1)
ACCAG506476AG506477
length779767
length of high quality
(start - end)		431 (40 - 470)417 (70 - 486)
definitionCHROMAT_FILE: MSMg01no408_n16.b1 PHD_FILE: MSMg01no408_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:58 2005CHROMAT_FILE: MSMg01no408_n16.g1 PHD_FILE: MSMg01no408_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTGCTTTTATACTCCATTGTGTAAATGTATACATTTTCTGTATCCATTCC
TCTGTTGAGGGACACCTGTGTTCTTTCCAGCTTCTGGCTATTATAAATAA
GGCTGCTATGAACATAGTGGAGCTTGTGTCCTTATTAGAAGTTGGAACAT
CTTCTGGGCATATGCCCAGGAGTGATACTGCTGTATCTTCTGGTAGAACT
ATGTCCAATTTTCTGAGGAACCACCAAACTGATTTCCAGGTTGTACCAGC
TTGTAATCCCACCAGCAATGAAAGAGTGTTCCTCTTTCTCCACACCTTTG
CCAGCATCTGCTGTCACCTGAGTTTTTTATCTTAGCCATTCTGACTTGTA
CAAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAG
GATGTTGAATATTTTTTTTTTGGTGCTTCACAAACATTCCGTGATCTTCT
GTTGAGAATTTTTTGTTTATTACGTATCCCCCTTTTTAATAAGGTCTTTT
GCTCTTTTTTCTTCTCTATTCTTATCCTTACTTCGACTCACCTTCTATTG
ATCTACCTTTATTCTTATTCCCCTTTTATCCTCCTTCTCTTCTTTTCCCC
CTTTTCTCTTTTCTCCTCTTTCCTTTTCAAACTTCCCTTTTTTCCTGTTT
TATCTCTTCTCCTCTGCTTCCTTCATTTTCTCCTTCTTCTTGCCTTTTTT
CTTTGTTTTTTTTCCCCTCTTTCTCCTTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAAGTGCACTAAGTTACCTGGCTACTAAGTG
CCAGAGATAACTGCTTTACCAGTACTGGGATTGCAACTGTGCACAACTAT
GTCTGGTTTTGCATTTTGTTCTAATGTGGCTTATGAGGACTGAACCTACA
TCTTGTTGTTTGCAAGCGAGCATTTTACCAAGCAGCTCTCTTTAACTGTG
AGCATTTGTAATAAAATTTAATATCACTGAATACCTAGACTTGAGAGGAA
AAAGAACAATTTTCTAGTTTGAAAAAAGAAGCAAACCACATATTCCAGCT
TCAATCTTCTTTTTAAAGACATGTCCAACTAGTTGGTGTCAACCTGTGTG
GCAAAAAATCAATAGGTCTGCCCTAGAGAAACATGGATTGGGATTAAATT
TAGTTTTAAAGTCATAATAAACACTACATCTCGCATTGCTATGGGACATG
TAACCCATACCTATAACTGCCTTTCATCCCTGGTCCAAGAAAGAACTTGT
GGTTCAAGTTTTAAAGGAAATATGCCCAACTTTGTGTTTTTAAATTGCTT
TTCTTCAATATACACAACCTTCTGTTTCTCCCCTCCCCTCCTTTTTCTTC
TTATTCCTCTTTCCCATATTAACCCTTTCTTTCTGTTCCTTTCTTTTTTT
CCTAATTCTCTTTCTTTCCTTCCTTTCTCTTCCTCTTCATCCTCTATTCC
CTTTATCTCTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_n16.g1 MSMg01no408_n16.g1 CHROMAT_FILE:
MSMg01no408_n16.g1 PHD_FILE: MSMg01no408_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:58 2005
         (417 letters)



>mm_chr16_85883093_85883909
          Length = 817

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgcactaagttacctggctactaagtgccagagataactgctttaccagtactggg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgtactaagttacctggctactaagtgccagagataactgctttaccagtactggg 260

                                                                       
Query: 61  attgcaactgtgcacaactatgtctggttttgcattttgttctaatgtggcttatgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgcaactgtgcacaactatgtctggttttgcattttgttctaatgtggcttatgagga 320

                                                                       
Query: 121 ctgaacctacatcttgttgtttgcaagcgagcattttaccaagcagctctctttaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaacctacatcttgttgtttgcaagcgagcattttaccaagcagctctctttaactgt 380

                                                                       
Query: 181 gagcatttgtaataaaatttaatatcactgaatacctagacttgagaggaaaaagaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcatttgtaataaaatttaatatcactgaatacctagacttgagaggaaaaagaacaa 440

                                                                       
Query: 241 ttttctagtttgaaaaaagaagcaaaccacatattccagcttcaatcttctttttaaaga 300
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttttctagtttgaaaagagaagcaaaccacatattccagcttcaatattctttttaaaga 500

                                                                       
Query: 301 catgtccaactagttggtgtcaacctgtgtggcaaaaaatcaataggtctgccctagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtccaactagttggtgtcaacctgtgtggcaaaaaatcaataggtctgccctagaga 560

                                                                   
Query: 361 aacatggattgggattaaatttagttttaaagtcataataaacactacatctcgca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatggattgggattaaatttagttttaaagtcataataaacactacatctcgca 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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