BAC Information

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BAC

Clone NameMSMg01-411C10
Chromosome16 (Build37)
Map Location 51,299,928 - 51,300,394
singlet/doubletsinglet
Overlap genenone
Upstream geneBbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411C10.T7 (MSMg01no411_c10.b1)MSMg01-411C10.TJ (MSMg01no411_c10.g1)
ACCAG508231AG508232
length790744
length of high quality
(start - end)
31 (253 - 283)470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no411_c10.b1 PHD_FILE: MSMg01no411_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:06 2005CHROMAT_FILE: MSMg01no411_c10.g1 PHD_FILE: MSMg01no411_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATATTTTCCCCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATA
AGACAAAAAGACCACCAACAGATTGGGAAAGGATCCTTACCGATCCTAAA
TCAGATAGGAGACTAATATCCAACATATAGAACAAACTCAAGAAGGCGGA
CTCCTGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTAAACAA
TGAATTTTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATTCTTTTAAATGCAAATCAAAACACCCCTGAG
ATTCCACCTCACACCAGTCCCAATGGCTAAGATCAAAAATTCTGGCGACA
GCAGATGTTGGCGAGGATGTGCAGAAAGAGTAACATTCCCCCATTGTCGG
CGAGATTGCATGCTTGCACAACCACTCTGGAACTCAGTCTGCCAGTCCCT
CATATAACCGGATATATTATCACCTGCAGCACCCCGCCCTATCCGCATTG
GCCCTATATTCCACAACATGCCCCATCCGGTCCTAAAGCACTCTTGCTTC
TACCCTGCCTCTTAGTTCTTTCTTCATTTATACACCTTCTGCAACGCTGG
GCCACGAACCCCTTATGTTCCCCCCCCGTATGGTAATGCTATTTCTCTTA
TATATGTCGGTTTCATTCCATTCTCCCGTTATCTTCTTTCCCTTTTTTTT
CCCACCTACCATTGTTCACCTTTCACGCTTTCCTCCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGAGACAGTATTATTCCCTGA
ATGAGGAAGCTACCCCATGCATAGGCCTGTGTTTTAGCACCTATAGTACC
AAGGTCTTGGGGACAGGACCTGCTCCCTCTTCCTATTACATTTACTAAGT
GAATTTTCCCCCCTACAGTGAGCAATTACATGAAAGCCACCACCCGCTCA
GTGGTCATCAGAATTCTAAGAAAGCTTCTGAAATCACCATGACTGCTGCA
TCCTCCCTGTCTAATCTTGTTGTGGAAGTGGGGCCCTATATGCTCAAGGT
TCTTTTAAAAAAGAATCTAGCTATAAGGAAAAGGAGCTATGAGGAAGATG
AAAGACAAAGAGAAATTTTCTTCCTGGTTGGGAACTAGAACCTGACTGTG
TTGTAGAGAAATGTACATGACATCCAAGAGCAGTAAGGGTCTATGAATAG
GTAGCAGCATTGATCAACACCAAAAAGAAAAGAAAAACTTTGTTATAATG
ATGAGAGAGAGAAAGAGAGAGAGAGAGAGAGGCACTAGGTTAGCAAGCTA
CCTGTATCCAACCTTTTAATGAGATCTAGTCTTACCCCATATTTTGATAT
TATTAAGACCGGATTCCTAGCAGGGTACAAAACTAATTTGTGTTCCGATC
CTGTACCCACGATATTTTGATCCAACATCCTGGCGCTATGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_c10.g1 MSMg01no411_c10.g1 CHROMAT_FILE:
MSMg01no411_c10.g1 PHD_FILE: MSMg01no411_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:06 2005
         (470 letters)



>mm_chr16_51299728_51300594
          Length = 867

 Score =  812 bits (420), Expect = 0.0
 Identities = 457/470 (97%), Gaps = 3/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggagacagtattattccctgaatgaggaagctaccccatgcataggcctgtgtttta 60
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ccaggagacagtgctattccctgaatgaggaagctaccccatgcataggcctgtgtttta 608

                                                                       
Query: 61  gcacctatagtaccaaggtcttggggacaggacctgctccctcttcctattacatttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcacctatagtaccaaggtcttggggacaggacctgctccctcttcctattacatttact 548

                                                                       
Query: 121 aagtgaattttcccccctacagtgagcaattacatgaaagccaccacccgctcagtggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagtgaattttcccccctacagtgagcaattacatgaaagccaccacccgctcagtggtc 488

                                                                       
Query: 181 atcagaattctaagaaagcttctgaaatcaccatgactgctgcatcctccctgtctaatc 240
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 487 atcagaattctaagaaagcttctg-aatcaccatgactgctgcatcctccctgtctaacc 429

                                                                       
Query: 241 ttgttgtggaagtggggccctatatgctcaaggttcttttaaaaaagaatctagctataa 300
            ||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atggagtgggggtggggccctatatgctcaaggttcttttaaaaaagaatctagctataa 369

                                                                       
Query: 301 ggaaaaggagctatgaggaagatgaaagacaaagagaaattttcttcctggttgggaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 368 ggaaaaggagctatgaggaagatgaaagacaaagagaaattttcttcctggttgggagct 309

                                                                       
Query: 361 agaacctgactgtgttgtagagaaatgtacatgacatccaagagcagtaagggtctatga 420
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaacctgac--tgttgtagagaaatgtacatgacatccaagagcagtaagggtctatga 251

                                                             
Query: 421 ataggtagcagcattgatcaacaccaaaaagaaaagaaaaactttgttat 470
           ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atatgtagcagcattgatcaacaccaaaaagaaaagaaaaactttgttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 867
Length adjustment: 10
Effective length of query: 460
Effective length of database: 857
Effective search space:   394220
Effective search space used:   394220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)