BAC Information

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BAC

Clone NameMSMg01-411F22
Chromosome16 (Build37)
Map Location 42,527,271 - 42,527,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411F22.T7 (MSMg01no411_f22.b1)MSMg01-411F22.TJ (MSMg01no411_f22.g1)
ACCAG508397AG508398
length774771
length of high quality
(start - end)
534 (66 - 599)561 (75 - 635)
definitionCHROMAT_FILE: MSMg01no411_f22.b1 PHD_FILE: MSMg01no411_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:23 2005CHROMAT_FILE: MSMg01no411_f22.g1 PHD_FILE: MSMg01no411_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTATAAAGATTTCTGTTGTGGCTGTCCTTATAGTCCAGGGACTGCAGGAA
GATGCTCTTACAGAGTGGAAAACCGGAGCAGAAACAAAGGAGATGCCAAA
GCAACAGATACCCAATGGTCAGTTTTTACTATTGGATACAACATGGTTAC
AATTATAAGTGGGTCTGGTGGTTCAAATGAGAAATCCCCTCCATAGGCTC
ATGAACTTGAATGCTTGGTTGTGAACTGGCTGTGCTCTTAAGGAAGGTTA
CAAATTTAGGAGGTAGAACCTTGCTGGAGGAAGTAAGCTACCAGGGTCAG
GATTTGAGGTTTTGTAACCTGGACTCATTTACTGCTCTCTTTCTCTGCTT
CCTATATGCAGACCTCTGCTTCCTATATGCAGACCTCTGCTTCCAGACTG
CTCCATGCCTCTCCAACACGATGGATCTTATCCTCTTTGGAACTGTAAAC
TAAATAAACACTTGTCTCCTCTAAGTTGCTTTTAGTTGTGGTATATTATC
ACAGCAACAAGAAAGTAACTAATACAGTGATCATTTGTGAATAATAGCCA
GGAAGGCCTGGCCCACAGTGGTTCATGGAGATGAATAACAGAGTACCTAT
AGTCAACCATCAAAGATACGCTTAATAGATTTATCCAAGTCAGTTTAAGC
CAGATAGCAGGAGTTTTGTGAGTATTTACGGTAGGTCACAATCCCTTATC
CCGATTTATGAAACAGAGCCCGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAAAAATTCATAGGACTTAAAGCTTCTATTCTTT
GTCCAGCCTTTTAAAATAGATAATATTCTAAAATAGTGTCTCTCTTTGTC
ACTGAGATGCATTTCCTGCATGCAGCAAAATTCTGGGTCCTGTTTATGTA
TCCAGTCTGTTAGTCTGTGTCTTTTTATTGGGGAATTAAGTCCATTGATG
TTAAGAGATATTAAGGAAAAGTGATTGTTGTTTCCTGTTTGTCTTAGGGT
TTTACTGCTGTGAACAGATACTTTTATCAAAGCAAGTCTTATTTAAAAAA
AAAAAACATTTAATTGAGGTTGGCTTACAGGTTCAGTGGTTCAGTCCATT
ATCATCAAAGTGGGAGCACAGCAGCATCCAGGCAGGCATGTCACATGCAG
AGCTGAGAGTTCTACATCTTCATCCAAAGGCTGCTAGTGGAAGATTGACT
TCCAGGCACCTAGGGTGAGAGTGTTAAGCCCACACCCACAGTGATACACC
TACTCCAACCAGGTCACACCTCCAAATGGTGCCACTCCCTGATCCAAGAA
TATACAAACCATTGCACTGTTATTTTTGTTGTTAGAGGTGGAATTATGTT
TGTGNGGCTATCTTCTTTTTGCTTTGNTAAAGAAAATTAATTTCCTGCTT
TTTCAAGGCAAAGTTTCCCTCCCGGTGTTGAAGTTTTTTATTATTTATCC
TTTGAAGTCTTGATTTGACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_f22.b1 MSMg01no411_f22.b1 CHROMAT_FILE:
MSMg01no411_f22.b1 PHD_FILE: MSMg01no411_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:23 2005
         (534 letters)



>mm_chr16_42527271_42528204
          Length = 934

 Score =  677 bits (350), Expect = 0.0
 Identities = 350/350 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtggctgtccttatagtccagggactgcaggaagatgctcttacagagtggaaaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgtggctgtccttatagtccagggactgcaggaagatgctcttacagagtggaaaaccg 291

                                                                       
Query: 61  gagcagaaacaaaggagatgccaaagcaacagatacccaatggtcagtttttactattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagcagaaacaaaggagatgccaaagcaacagatacccaatggtcagtttttactattgg 231

                                                                       
Query: 121 atacaacatggttacaattataagtgggtctggtggttcaaatgagaaatcccctccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atacaacatggttacaattataagtgggtctggtggttcaaatgagaaatcccctccata 171

                                                                       
Query: 181 ggctcatgaacttgaatgcttggttgtgaactggctgtgctcttaaggaaggttacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ggctcatgaacttgaatgcttggttgtgaactggctgtgctcttaaggaaggttacaaat 111

                                                                       
Query: 241 ttaggaggtagaaccttgctggaggaagtaagctaccagggtcaggatttgaggttttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ttaggaggtagaaccttgctggaggaagtaagctaccagggtcaggatttgaggttttgt 51

                                                             
Query: 301 aacctggactcatttactgctctctttctctgcttcctatatgcagacct 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  aacctggactcatttactgctctctttctctgcttcctatatgcagacct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)