BAC Information

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BAC

Clone NameMSMg01-411N12
Chromosome16 (Build37)
Map Location 33,609,249 - 33,609,543
singlet/doubletsinglet
Overlap geneSlc12a8
Upstream geneTfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
Downstream gene4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411N12.T7 (MSMg01no411_n12.b1)MSMg01-411N12.TJ (MSMg01no411_n12.g1)
ACCAG508759AG508760
length768733
length of high quality
(start - end)
34 (85 - 118)301 (323 - 623)
definitionCHROMAT_FILE: MSMg01no411_n12.b1 PHD_FILE: MSMg01no411_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:01 2005CHROMAT_FILE: MSMg01no411_n12.g1 PHD_FILE: MSMg01no411_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTAGCCGATCC
GCGGAATTCCAGGATAGCAAGAAACTATACAGNGAATCTCTGTCGGGGGT
GGGGGTGGGGGGAGANTTTTTCCCCTNTTTTTCTTTTCCCTCTCTCTCTT
CCCTTCCTCTTTGTCGCGGGGGGGGCTTTTCTTTTCCCCTATTTCCCCGC
TGCCTCTTCCGCTCACTAACCCTCTACTTCATCCACCTTTTTTTTTCTAG
AGCCCCAGCTCTCCTCTTCTATCTTTCCTTTGCACACTCTCCCACCCCCC
ACTTTCCGTCATTTTCCACCACCCGCNGCCGCCGCCCAAAATTTTTTCTT
CCTCCTCCAACATACTATATTAAACTCATATAACCATCAATACAGACGCA
CTTCTACAAACTCTTTATGTATACTTATTATTACCCAATACATCAATCCT
CTTATACCCCCTTCTCTACTCCCTATTTTTTTCATTCCCCCCCCCCTCTA
CCATCTTCTAATATATTTTTCCCATCTTCATCGCTACCATCCCCCCCTTC
TACTCACACTCCTTATTCTCCTTCCCTTCTCCCCCCTTTTCCTCATCACC
ACCAATCCCCCTTTCTCCATCCTACCATCTACCTCACACATCCTTTCTCC
TTCTTTTTATCCCCCTCACCCTCACTCATTCTCCCATCTCTATATTCTCT
TCCTTAGTATTTATCCTATCCTATCGCCACATATTACATTTTATCATCGT
CATTCTCTTCTACCTATN
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGAGTTCCACTGCTTCTTTACAGA
ACGGAGGTCATGTGACACCAAGGACACATATTTGGCTCTTAACCTCAAAA
GAATTAGATTTTCTGAAGAAAAAAAAATCCCCTAAAACTCCTATGGTGCC
CCGAGTTCACAGAATACAAGCAGACTCTGAAACTCCCATAATTTTTAGAG
AATGGTGGCCAATTAGGCCAGCGTTGTGAATTCCTGCACTGCTCTCTGGG
GTAGAGCTGAGCATTGTAGTTCGTGATGGGAAATCCTGACAGAGGAGAAG
GAACTACTTTCTAAAGATGTGCTTGAGGCTGCTCTCCACATCCACTCAGG
TCTCTCTTTATAGTGAGTAGATTCCAGTACAGGTGACACTTGTTTCCAGA
GGTCATGACCGTAGACCACAGGCAGGATGGGAAGGGCCCCAAATCTTGGA
CACTGGGTTGCAAGGTTTGCTTTCAAGGAAGTTTTCCCCTCTCTTCTCTC
TTTCTCTTTCTCTCTCCCCTCCTATGTGCAAGTGTGTGCACTTGCATGCA
TGTGTGCACGCACGCACACACTGACACACACATTCCTCCACCCACTTTTT
TATTCACACATACACATGTTCAGAACACACTTACCCCTCCTACTTGCTTG
TAAATGAATGCGCACCCTCTCTGAAGTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_n12.g1 MSMg01no411_n12.g1 CHROMAT_FILE:
MSMg01no411_n12.g1 PHD_FILE: MSMg01no411_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:02 2005
         (301 letters)



>mm_chr16_33609049_33609749
          Length = 701

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgatgggaaatcctgacagaggagaaggaactactttctaaagatgtgcttgaggctgc 60
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 201 gtgatgggaaatcctgacagaggagacggaactactttctaaagatgcgcttgaggctgc 260

                                                                       
Query: 61  tctccacatccactcaggtctctctttatagtgagtagattccagtacaggtgacacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccacatccactcaggtctctctttatagtgagtagattccagtacaggtgacacttg 320

                                                                       
Query: 121 tttccagaggtcatgaccgtagaccacaggcaggatgggaagggccccaaatcttggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccagaggtcatgaccgtagaccacaggcaggatgggaagggccccaaatcttggaca 380

                                                                       
Query: 181 ctgggttgcaaggtttgctttcaaggaagttttcccctctcttctctctttctctttctc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctgggttgcaaggtttgctttcaaggaagtttccccctctcttctctctttctctttctc 440

                                                                  
Query: 241 tctcccctcctatgtgcaagtgtgtgcacttgcatgcatgtgtgcacgcacgcac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tctcccctcctatgtgcaagtgtgtgcacttgcatgcatgtgtgcacgcatgcac 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)