Query= MSMg01no412_b24.b1 MSMg01no412_b24.b1 CHROMAT_FILE:
MSMg01no412_b24.b1 PHD_FILE: MSMg01no412_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:23 2005
(503 letters)
>mm_chr16_18501460_18502358
Length = 899
Score = 872 bits (451), Expect = 0.0
Identities = 479/491 (97%), Gaps = 8/491 (1%)
Strand = Plus / Minus
Query: 16 gaattct--tctgttttctcagggtctaagttcctcagataagctgattctagcttccaa 73
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcttctctgttttctgagggtctaagttcctcagataagctgattctagcttccaa 649
Query: 74 gaagaggagttaacagattttaaaggtactgaaacaagtttgggggctgcctcctttaga 133
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 648 gaagaggagttaacagattttaaagatactgaaacaagtttgggggctgcctcctttaga 589
Query: 134 tgggagga-aagttggcctcacagcattacaataaagactaaatgcaaaactagactggg 192
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tggga-gacaagttggcctcacagcattacaataaagactaaatgcaaaactagactggg 530
Query: 193 tcagggactctcggggtccaggggagctctctctccttggccaggtgctcctggatatag 252
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 529 tcagggactctcggggtccaggggag----ctctccttggccaggtgctcctggatatag 474
Query: 253 ggttagacctcaaccaagcagggtttggagggagcagctaatgcaggcttcagttcccat 312
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 ggttagacctcaaccaagcagggtttggagggagcagctaaggcaggcttcagttcccat 414
Query: 313 gctagggcttctgagcacacctaactaagcacagctgtgcttagttgtgggctgccgtgg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gctagggcttctgagcacacctaactaagcacagctgtgcttagttgtgggctgccgtgg 354
Query: 373 ggccactggtggctggcttgatgtggaaggcaggagacagtggcatggtactcaacaaaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggccactggtggctggcttgatgtggaaggcaggagacagtggcatggtactcaacaaaa 294
Query: 433 ctgttttgaataacttcttcgagatcctggcagaagagttcataatcgccaggcaaggta 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctgttttgaataacttcttcgagatcctggcagaagagttcataatcgccaggcaaggta 234
Query: 493 cctattgcggt 503
|||||| ||||
Sbjct: 233 cctatttcggt 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space: 438277
Effective search space used: 438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_b24.g1 MSMg01no412_b24.g1 CHROMAT_FILE:
MSMg01no412_b24.g1 PHD_FILE: MSMg01no412_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:23 2005
(439 letters)
>mm_chr16_18323309_18324147
Length = 839
Score = 748 bits (387), Expect = 0.0
Identities = 426/439 (97%)
Strand = Plus / Plus
Query: 1 attactttgttcagctctcgccagatagcctgtgatgtgactaactgtttatcattttcc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactttgttcagctctccccagatagcctgtgatgtgactaactgtttatcattttcc 260
Query: 61 ttgcaggattccactaactccctttaactcttctgccagagaactagaatcacctcctct 120
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttgtaggattccactaactccctttaactcttctgccagaaaactagaatcacctcctct 320
Query: 121 agcctgatccagttctgctgcctgccctctgtagaagaggaaatgctgagtccctacatc 180
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctgatccagctctgttgcctgccctctgtagaagaggaaatgctgagtccctacatc 380
Query: 181 ctattccctagactgaaatgagggaacccagccactgtgccaggcattccgcaaagtgac 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctattccctagactgaaatgagggaacccagccactgtgccaggcattccacaaagtgac 440
Query: 241 tcaacaggattttctcactgaaactactttgtttctggaacacatcctaagatttcgaaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tcaacaggaggatctcactgaaactactttgtttctggaacacatcctaagattttgaaa 500
Query: 301 atgctccagacaaatgtaagagaggagttccacagtccatttccagttgtgggctaaatt 360
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttccagacaaacgtaagagaggagttccacagtccatttccagttgtgggctaaatt 560
Query: 361 tctgccttgtgctctacatggacaaacaaatgctggcacatgctacagaaccaaggggct 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tctgccttgtgctctacatggacaaacaaatgctggcacatgctaaagaaccaaggggct 620
Query: 421 gccctgcgtgtaactggca 439
|||||||||||||||||||
Sbjct: 621 gccctgcgtgtaactggca 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
