Query= MSMg01no412_k12.b1 MSMg01no412_k12.b1 CHROMAT_FILE:
MSMg01no412_k12.b1 PHD_FILE: MSMg01no412_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:06 2005
(249 letters)
>mm_chr16_90154188_90154835
Length = 648
Score = 389 bits (201), Expect = e-112
Identities = 237/249 (95%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1 ctatacagtaaggccctgtctgggagtgaggagggatggaggcaaggaaagaagagggag 60
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ctatacaatacggccctgtctgggagtggggagggatggaggcaaggaaagaagagggag 260
Query: 61 aggggccaggagagagaatctctcagcttggtaaagcagacttataaatccagctagctc 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 261 aggggccaggagagagaatctctcagcttggtaaagcagatttataaatccagcta-ctc 319
Query: 121 gggaagctagaaaaggtgacagccttggagattttgtaagaacgcatctcagaatagaaa 180
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 gggaagctagaaaagatgacagccttggagattttgtaagaacacatctcagaatagaaa 379
Query: 181 ataaaaagagctgacgggccagtgtgaaggctcagtaggtaaaggcactgtgctgcctga 240
||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct: 380 ttaaaaagagctgatgggccagtgtgaaggctcagtaagtaaaggtactatgctgcctga 439
Query: 241 agacgggag 249
|||||||||
Sbjct: 440 agacgggag 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no412_k12.g1 MSMg01no412_k12.g1 CHROMAT_FILE:
MSMg01no412_k12.g1 PHD_FILE: MSMg01no412_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:06 2005
(389 letters)
>mm_chr10_58086667_58087455
Length = 789
Score = 706 bits (365), Expect = 0.0
Identities = 383/389 (98%)
Strand = Plus / Plus
Query: 1 cattttctttcagcactaacctaaacgaacaaaagtttggcctttagagttctgtccaca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cattttctttcagcactaacctaaacgaacaaaagtttggcatttagagttctgtccaca 260
Query: 61 gctagaggagagtggagagcactggcctatcttcggctctcccagagctcctccagtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagaggagagtggagagcactggcctatcttcggctctcccagagctcctccagtctg 320
Query: 121 aagtgttcattgaacacctgtggcccagcaagggtcaaggccatttatcttcctgtaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgttcattgaacacctgtggcccagcaagggtcaaggccatttatcttcctgtaaac 380
Query: 181 atgtgatcccttactcgttcattcttaatttgatttcctctacagatgctcctggtctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atgtgatcccttactcgttcattcttaatttgatttcctctacagatgctcctggcctta 440
Query: 241 accgtgaggttgcattctgataagattgtaagctaaagaaattgttaaagagaaaatgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtgaggttgcattctgataagattgtaagctaaagaaattgttaaagagaaaatgcg 500
Query: 301 ttcagtgcacccagctctctacttagctggtggagcaggctcagaacacgcatctttgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttcagtgcacccagctctctacttagctggtggagcaggctcagaacacacatctttgcc 560
Query: 361 tacagccaggttgcatctgctaacataaa 389
||||| ||||||||||||||||||||||
Sbjct: 561 tacagttaggttgcatctgctaacataaa 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
