BAC Information

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BAC

Clone NameMSMg01-413E23
Chromosome16 (Build37)
Map Location 76,323,489 - 76,323,793
singlet/doubletsinglet
Overlap geneNrip1
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457
Downstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413E23.T7 (MSMg01no413_e23.b1)MSMg01-413E23.TJ (MSMg01no413_e23.g1)
ACCAG509874AG509875
length751788
length of high quality
(start - end)		575 (33 - 607)379 (65 - 443)
definitionCHROMAT_FILE: MSMg01no413_e23.b1 PHD_FILE: MSMg01no413_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:57 2005CHROMAT_FILE: MSMg01no413_e23.g1 PHD_FILE: MSMg01no413_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACAGCTT
ATGTCATGACTCATCACTGGAGAGAACTGATTCTCTTCTCAGCAACCATC
AGTTGCCCACAGCTCTGCATCAAGGGGTCCGACTTTGTGGAATTTCTTTC
ACTCACATTAGCATATCAACTGATAATTGTCATCCCATCTCAGCCAGTCT
TATTCAGTCATGGGTGCATGTTTCCTAGGATATAATATCTAGCAACAGGC
ATCTGGATCCATCAGCTCTTCCAACATCTTTCCCCTCTCCTGGAGTGTCT
GGTCCCTCAGTCTTAGGGGTAGTGGTTGTATCATTTGGCATTAGACCCGG
TACAGACCCTTATTCTCTGCATTTCAGCCATCCTGGATCTCTGTCAGAGT
CGCCATCTGTTGCAAAAAAGGAGCTTCTTTGACAAAGGTGAAAGCATCAT
CCATCTACGGGTAAAGAACGGCACTTAGAATACAATTAGAAGTTGTAGTA
GTTTAGGAAAATGGCAGCAGTAGTTGGTCGTCCTCTCAGCTGTGACCTCG
CCAGCATGGGCAGCTGGTCAGATCTACCATACCAGACATGAATTTATTCC
CACTGAGTGAGCCTTACGTCCAATTAGACAGCTCTTGATTACTCCCAAGA
TACAAAATCCACTATTTATACAGTAGCGATATTTTGCCTACCTTTTTAGA
CCAAAATTATTTTTTCAGTTTACAACGTTATCTCCATATAAATGATCCTA
N

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCGTGAGTGGAGATGTGGTTGAGGTTCAGTAGAGTC
CTGAACTTACTTATGCTGTTTTCTGAGAGGAAATAATTTCCTTGCTTCTT
GCTTCTGCTAACTACTCGCTTGTTGCTGTTGTTGTTGTTGTTAATCCTGG
GATGGGGTGTGCAGGTCAGGGGACAACTTTGGCTTGGGTTCTCCCTCTCT
AGCTTTATGTGGGTTCCAGGAACCAGACTCAAGTAGCTAACATGTGCAGC
AAGCTGTTTTTACCTGCTGAGCCATCTCACAGTCCAGTCACAACAGTACC
CAGTTTACTTCATGAAACTGTGTTCTGAGTGCTAGAGCTGGTGTGTTTGT
TTATTTGTTTGTTTTGTCATTGTTGGTTTTTGTTTTTTTGTTTTTGGTTT
TTGGTTTTTTCTTCTTCCCCAACNGGGTTTTCCTGTCTTNCCTTGGATGT
CCTGTACCTCCCTGCCCTTTNTGACCTGCTTTCCTCGTCTTCCCTTATTT
CCCCTTGCCTCTTGCCTCCCTGAGGTCTGGGNTCCCACGGGGGCCCTACC
GGGCCTCCTCTTCGTATTTTTTTTTTTTTTCTTCCCACTCTTCTATGTTT
GGCCTTACCTTTTTTTCTCTTTTACTTTTCTATGTATTCTCATTCTCTTC
TGACTCCCATGTGTCTTTTTCTGGTTCAACCCTACTTTTTCTCTCTTTTT
CTCATCTAGTCTTTTTTCTATTGCCTTAACATACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_e23.g1 MSMg01no413_e23.g1 CHROMAT_FILE:
MSMg01no413_e23.g1 PHD_FILE: MSMg01no413_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:57 2005
         (379 letters)



>mm_chr16_76323489_76324267
          Length = 779

 Score =  559 bits (289), Expect = e-163
 Identities = 300/305 (98%), Gaps = 3/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtgagtggagatgtggttgaggttcagtagagtcctgaacttacttatgctgttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcgtgagtggagatgtggttgaggttcagtagagtcctgaacttacttatgctgttttct 246

                                                                       
Query: 61  gagaggaaataatttccttgcttcttgcttctgctaactactcgcttgttgc---tgttg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 245 gagaggaaataatttccttgcttcttgcttctgctaactactcgcttgttgctattgttg 186

                                                                       
Query: 118 ttgttgttgttaatcctgggatggggtgtgcaggtcaggggacaactttggcttgggttc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttgttgttgttaatcctgggatggggtgtgcaggtcaggggacaactttggcttgggttc 126

                                                                       
Query: 178 tccctctctagctttatgtgggttccaggaaccagactcaagtagctaacatgtgcagca 237
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 125 tccctctctagctttatgtgggttccaggaaccagactcaagtagataacatgtgcagca 66

                                                                       
Query: 238 agctgtttttacctgctgagccatctcacagtccagtcacaacagtacccagtttacttc 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  agctgtttttacctactgagccatctcacagtccagtcacaacagtacccagtttacttc 6

                
Query: 298 atgaa 302
           |||||
Sbjct: 5   atgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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