Query= MSMg01no413_f01.b1 MSMg01no413_f01.b1 CHROMAT_FILE:
MSMg01no413_f01.b1 PHD_FILE: MSMg01no413_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
(670 letters)
>mm_chr16_81807076_81808145
Length = 1070
Score = 1236 bits (639), Expect = 0.0
Identities = 660/667 (98%)
Strand = Plus / Plus
Query: 4 ggaattcaagaagtgcctgtaggtataaggtagatgtctgttttcacagatgggatgtaa 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattcaagaagtgcctgtaggtataaggtagatgtgtgttttcacagatgggatgtaa 263
Query: 64 ttacctaaagcttaagaagaatagatgtgagggaacctagacaattttaatgtaggtata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttacctaaagcttaagaagaatagatgtgagggaacctagacaattttaatgtaggtata 323
Query: 124 agaatgttgtgttttacacttcttcattctgtcacccaagaagccagatgcgtttttaaa 183
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 agaatgttgggttttacacttcttcattctgtcacctaagaagccagatgcgtttttaaa 383
Query: 184 atttagaagtttagaggtacttgagagagaaatatgctgcacatctactgtgtattgcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttagaagtttagaggtacttgagagagaaatatgctgcacatctactgtgtattgcat 443
Query: 244 aacactcttagagggggtctgcaatcaagtatagctttatgtgcacagaaaatcatatga 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 aacactcttagagggggtctgcaatcaagtagagctttatgtgcacagaaaatcatatga 503
Query: 304 atattcacagcaagtaagaagatacactataaatatcctcaaatctattcatttactaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atattcacagcaagtaagaagatacactataaatatcctcaaatctattcatttactaag 563
Query: 364 ggatacagaccagacaaatttaaatgtccattgagatatgcaaacattttgttttgagag 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 ggatacagaccagacaaatttaaatgtccattgagacatgcaaacattttgttttgagag 623
Query: 424 gtttggggatttttaaaatcacagaaaagtaattaggcacctgtatttgctcacataatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttggggatttttaaaatcacagaaaagtaattaggcacctgtatttgctcacataatt 683
Query: 484 taacttagatattgcaaatatagtcattttaacccaagagcatattgattaaagattcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taacttagatattgcaaatatagtcattttaacccaagagcatattgattaaagattcat 743
Query: 544 gcatggctacaagtattgtcaggacaatttatcaaactaatatacattttaaggatttta 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 gcatggctacaagtattgtcaggacaatttatcaaactaatataaattttaaggatttta 803
Query: 604 aaaataatttttagttttttagaatataaatactttaaggagatgagagattattttgtt 663
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaataattttaagttttttagaatataaatactttaaggagatgagagattattttgtt 863
Query: 664 aggtaca 670
|||||||
Sbjct: 864 aggtaca 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_f01.g1 MSMg01no413_f01.g1 CHROMAT_FILE:
MSMg01no413_f01.g1 PHD_FILE: MSMg01no413_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
(587 letters)
>mm_chr16_81926213_81927200
Length = 988
Score = 857 bits (443), Expect = 0.0
Identities = 517/547 (94%), Gaps = 12/547 (2%)
Strand = Plus / Minus
Query: 1 aatgaatgttgctcctaatataaaattcacatgtcataggtgaaataaaataaatgagta 60
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 546 aatgaatgttgctcctaatatataattcacgtgtcataggtgaaataaaataaatgagta 487
Query: 61 ctgaagcacccagaaacaaatcagacactgcagaaacactcagagtccagcacggaggga 120
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 486 ctgaagcacccagaaacaaatcagacactgcagagacactcagaatccagcacggaggga 427
Query: 121 tatttttgttattaagtacatacagaactacatggatgagtgaatataccacaccaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 426 tatttttgttattaagtacatacagaactacatggatgagtgaatataccataccaaata 367
Query: 181 agaaaagacatttgttagaaatggaggagagatgaaaatacacttaggtaagaactgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaaaagacatttgttagaaatggaggagagatgaaaatacacttaggtaagaactgtga 307
Query: 241 gaattgtcaaagacctgtgttggtcagcgttcacttgtggaacagattggtttacatgtt 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 gaattgtcaaagacctgtgttggtcagtgttcacttgtggaacagattggtttacatgtt 247
Query: 301 atggaccaggtagtctgtttgatt-ttcagtattgtgtgaaactgcagcttccttcatcc 359
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct: 246 atggaccaggtagtctgtttgattctacagtattgtgtgaaactgcagcttccttcttcc 187
Query: 360 tctgactgttattagtgttttcacaataaaatgctgctcacatttaaggtaagtcttccc 419
||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct: 186 tctgactgttattagtgttttcacactaaaatgctgctcccatttaaggtaaatcttccc 127
Query: 420 atttcaaataatctga-tcaaaaaaaaaataaaataaataa---------aaagaaagaa 469
|||||||||||||||| | |||||||||| |||| ||| || ||||||||||
Sbjct: 126 atttcaaataatctgatttaaaaaaaaaa-aaaaaaaacaaaaacaaaagaaagaaagaa 68
Query: 470 aaaaagattcctcccagaagtgcccagtgacttgcctttcagttgattataaattatgtc 529
|||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 67 aaaaagattcctcccagaagtgcctagtgacttggctttcagttgattgcaaattatgtc 8
Query: 530 aagttga 536
|||||||
Sbjct: 7 aagttga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
