BAC Information

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BAC

Clone NameMSMg01-413I22
Chromosome16 (Build37)
Map Location 83,038,643 - 83,039,064
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413I22.T7 (MSMg01no413_i22.b1)MSMg01-413I22.TJ (MSMg01no413_i22.g1)
ACCAG510064AG510065
length756781
length of high quality
(start - end)
502 (57 - 558)422 (62 - 483)
definitionCHROMAT_FILE: MSMg01no413_i22.b1 PHD_FILE: MSMg01no413_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:16 2005CHROMAT_FILE: MSMg01no413_i22.g1 PHD_FILE: MSMg01no413_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGANATTC
TTACACAAATGTATGGATTTGGAGGATATCATTCTAAGTGAGGTAACCCA
ATCACAAAAGAACACACATGATTTGCACTGACTGACAAATGGATATTAGC
CCAGAATCTCAGGATACCCAAGATACAATTTGCAAAACACATGAAACTCA
AGAAGAAGGAATGCCAAAGTGTGGATACTTCGATCCTTCTTAGAAGGGAG
AACAAAATACCCATTGAAGGAGTTATAGAGACAAAGTTCAGAGCAGAGAC
TGAAGGAATGACCATCCAGAAACTAGGGATCCATCCAATAAACAACCATC
AAACCCAGATACTATTGCAGATGCCAAGAAGAGCTTTTCGAAAGGAGCCT
GATATAGCTGTCTCCTGAGAGGTTCTGTCAGTATCTGACTAATACAGAAG
TGGATGCTCACAGTCATACTTTAGACATAGCACAGGATTCCTATTGAAGG
AGCTAGAGAAAACACCCAAGGAGCTGAAGGGATCTGCAGCCCTAGAGGAA
GAACAAAAATATGAACTAACCAGTACCCTCAGAGCTCATGTCTCTAGCTG
TATATGTATCAGAAGATGACCTAGTTGGCCATCAATTGGAAGAGAGGCTC
TTGGTCCTTGGAAACTACTATGCCCCTATAAGGTAATGCCATGGCCAAGC
AATGGGAATTGGTTGGGGTTGGTCAAAAAGGTTAAAATTTCCCCTTTTTT
CCCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACATGATTATTTCCCTGATCTTTACTTTACTTCTTGAAT
TTTCTCAAAAATTGCTGAATCAGACCAACTATCTGACTTTAATCTAGCAA
TGGATTGTTTCCAGAAGTTTGAAAACATTAGAGCACCCAAATGACAACAA
GGGGAATGTATGAGATGCATGTAGGTAGGGTCTGAGTTTCTGTTTTCACA
GAGCAAATGTGGCAGCAGTTTAGTGTAGAAGGAATCAGAAGAGAAGCATG
TAGACATGTGAGCAAAATATTAATTTGGAAGATTGAAAAAATGCTCAGTG
TTATCATGAGCACTTGTTGCTGTATTGGAAAACCTAGAATTGGGACTACC
ATCATCATTTGGTTCACAACATTCACATAAACAACACCCCGTGACATCTG
TTTCAGAGCATCCAACACCATCTCCATATGTTCAGAAAAATATATACAGG
TTGTGAGTATCCCTGAATTCAGGAATACCCACCCACCCCCCTCCATATAT
AAAATAATAATTTAAAATGTATTACCATAAATTGGGTAAAGGGGAGGGAT
GGTGGAACCCTACCCTTAAGGGGGTTAGACCAATGGTTTAGTATGGGAAA
TTTCCCCCTCCCCATTATTTGTTTTGGACACCACAAAAAAAAACGTCTTT
AGGGCATACTCCCTTCTTTGTTTCCGGAAAATTTTCATGGGAAAACCCCT
TATTTTTTGCAAAAAAAAGAAAATGCTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_i22.g1 MSMg01no413_i22.g1 CHROMAT_FILE:
MSMg01no413_i22.g1 PHD_FILE: MSMg01no413_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:16 2005
         (422 letters)



>mm_chr16_83038443_83039264
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgattatttccctgatctttactttacttcttgaattttctcaaaaattgctgaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acatgattatttccctgatctttactttacttcttgaattttctcaaaaattgctgaatc 563

                                                                       
Query: 61  agaccaactatctgactttaatctagcaatggattgtttccagaagtttgaaaacattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaccaactatctgactttaatctagcaatggattgtttccagaagtttgaaaacattag 503

                                                                       
Query: 121 agcacccaaatgacaacaaggggaatgtatgagatgcatgtaggtagggtctgagtttct 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcacccagatgacaacaaggggaatgtatgagatgcatgtaggtagggtctgagtttct 443

                                                                       
Query: 181 gttttcacagagcaaatgtggcagcagtttagtgtagaaggaatcagaagagaagcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttttcacagagcaaatgtggcagcagtttagtgtagaaggaatcagaagagaagcatgt 383

                                                                       
Query: 241 agacatgtgagcaaaatattaatttggaagattgaaaaaatgctcagtgttatcatgagc 300
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 agatatgtgagcaaaatattaattcggaagattgaaaaaatgctcagtgttatcatgagc 323

                                                                       
Query: 301 acttgttgctgtattggaaaacctagaattgggactaccatcatcatttggttcacaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acttgttgctgtattggaaaacctagaattgggactaccatcatcatttggttcacaaca 263

                                                                       
Query: 361 ttcacataaacaacaccccgtgacatctgtttcagagcatccaacaccatctccatatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcacataaacaacaccccgtgacatctgtttcagagcatccaacaccatctccatatgt 203

             
Query: 421 tc 422
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)