BAC Information

Click to search

BAC

Clone NameMSMg01-414O06
Chromosome16 (Build37)
Map Location 50,884,445 - 50,884,693
singlet/doubletsinglet
Overlap genenone
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O06.T7 (MSMg01no414_o06.b1)MSMg01-414O06.TJ (MSMg01no414_o06.g1)
ACCAG511079AG511080
length778782
length of high quality
(start - end)
477 (69 - 545)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no414_o06.b1 PHD_FILE: MSMg01no414_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005CHROMAT_FILE: MSMg01no414_o06.g1 PHD_FILE: MSMg01no414_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCACTCGAACTACCCAAGCTTTTATTGCTTCAACATAAGGAAGACCCC
AAACCCGGAAAATGGCGCTGCTTATATAGCCCGCAGCATGACGTTTCAGC
ACCTGATATGGCATGACAGCACCTGATTAGTTGCTTGCCCATCACCCCAT
TACTACGCCCCGAGATGGGCAGTGACTGGGCGTGAATTCACTCTTGCACT
TGCGCATAAGGCTTGTTTACTAGTTAGGCACAGTGGAAGCCAGCGCCATC
TTATAATGGCGATTGCTCACGGTTTGTTTCTCCACACCCCTTCTTAGAAT
TGGGAACAAAACAACCATGGAAGGAGTTACAGAGACAACGTTTAGAGCTG
AGACGAAAGGGTGGACCATCTAGAGACTGCCATATCTGGGGATCCATCCC
ATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTG
CTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGGCTATGCCGGGGCCTA
GCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGCTGGATCACAGTA
CCCCCCATGGAGAAGCTAGATAAAGTCCCCAGGAGTTGGGGGGAACTGTG
AACCTCAAAATGTATATTTTTTTTGACTTATTCCGTTCTCCCCTTGAACT
CCCGGCCCCACCGCGACACGATACAAAAAAGGCCTAGTCCTCGCCTCCCT
GGAATTATTATCCTTTTGTTTCTTTTTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTAGTCACTTTCCTGGCTGTTTATA
CTCTGACTTGTCTTAACACAATGCACTATTCCCTCGGCTGTTAATATATT
TCTGTTTGTTTTTATGCCACAGATTTCTCTTCTTCATTAAAACAAAAATT
TGTTCAGTCTGTTTAAAAATTACCTCCTTTGAGAAGTTTTCCCAAAGCCA
ACACCATGGCTTCATTTGTCATTATTTAATACAATCTGTTTCCTCAAGTC
TGGCGGCTCTTCTCCATGGTGCTGTTATTATTTGTAGACCTATTTATCTT
TCTCGCCACCTTGTAAACCCACTAAAGGCAGTCCATCCCTTTTAGGAGTT
TCGTATTCTTTGTTGTCTGATGCAGCACAAGACACATGCAAAGAGTTCAT
CAGCACAGTAGAACAAATGCTTTGTGTAAATCACCGGAAGTTTCTCCATG
GTTTGAGACGGCAGCAGATGCTTCATGTTGAGTAGGCTTCTCTCTGCTTC
CACACAATCACCAGAGTGCCAGCTGTCCTATTGTTAACGCTTTACAAATA
ATTAAACAATTTCTGGTATTAAATTTAAATGTGCATTTGAGAAGAGAAGG
TGAGCGGGAAGCAGTCTGTTTTATTTTATAGGAAATAAGAAGTTTTTACC
CAACATAATTTATTTTTCTAAATTGAGTCTCCCCTGTAAAACGCTACCTT
TTTTCGATTTTCTTTATGTTTCTACCTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o06.g1 MSMg01no414_o06.g1 CHROMAT_FILE:
MSMg01no414_o06.g1 PHD_FILE: MSMg01no414_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:05 2005
         (249 letters)



>mm_chr16_50884245_50884893
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctagtcactttcctggctgtttatactctgacttgtcttaacacaatgcactattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccctagtcactttcctggctgtttatactctgacttgtcttaacacaatgtactattcc 260

                                                                       
Query: 61  ctcggctgttaatatatttctgtttgtttttatgccacagatttctcttcttcattaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggctgttaatatatttctgtttgtttttatgccacagatttctcttcttcattaaaa 320

                                                                       
Query: 121 caaaaatttgttcagtctgtttaaaaattacctcctttgagaagttttcccaaagccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaatttgttcagtctgtttaaaaattacctcctttgagaagttttcccaaagccaac 380

                                                                       
Query: 181 accatggcttcatttgtcattatttaatacaatctgtttcctcaagtctggcggctcttc 240
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 accaaggcttcatttgtcattatttaatacaatctgtttcctcaagactggcggctcttc 440

                    
Query: 241 tccatggtg 249
           |||||||||
Sbjct: 441 tccatggtg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)