BAC Information

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BAC

Clone NameMSMg01-415K08
Chromosome16 (Build37)
Map Location 65,595,808 - 65,798,282
singlet/doubletdoublet
Overlap geneEG383186
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
Downstream geneVgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415K08.T7 (MSMg01no415_k08.b1)MSMg01-415K08.TJ (MSMg01no415_k08.g1)
ACCAG511655AG511656
length722725
length of high quality
(start - end)
245 (67 - 311)272 (321 - 592)
definitionCHROMAT_FILE: MSMg01no415_k08.b1 PHD_FILE: MSMg01no415_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:05 2005CHROMAT_FILE: MSMg01no415_k08.g1 PHD_FILE: MSMg01no415_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,595,808 - 65,596,052)(65,798,012 - 65,798,282)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCTCTTTCATTCTGTAGGATCTATTACATTTCACATTTTCCAAGATGT
CAGTCCTTAGTCCTTGGCTGCACAGATTCTGGGACTGTGGTGAGCAGATT
ATAAAGGTGGATGTATGTGGAACAATCTACACTCCTCATGTCAAACAGGA
TGTAGAAGAATGGAAGAAGCCTGGGTGAAATATACTCTTTAAAGACACAC
CCCAGTAGATGATGCAAACCACCTTCCAGCTTTCTGATAGTCTATTTAGA
AAAAGATCCATATTTGTTTTAATCTGTTCCTTAGGTCATAGTTCTCAGAA
TTTAATCATGTTTGGAAAAGCACTCACAGGTACACATAGAAGTGTGCTTT
GTTGATCTGGTCATCCCTCAAACTGATTAATTGAGAAAATTTAACCCTTT
CAGTCAGTGTCAATCGGTAAATAGAGGGCTCATGTATACTAGTGCTTAGA
TTAAGCTTCAGTTCAATTAAAAAAGGGACAGACTCTAACTTGCCTGTATC
GGCTATGGCAACTTTTATAAATGGCTATAGTTTCTTGCTGAAATTCCCAA
CTAAATGCATGTTTTCTTTCTTCTACTGTAATGGAATGTCCTGGATTGTT
GCCCCCCTTTTTCAACCTCATCATTTTGCGCAGCAAAATTTCTTATAACC
TTTATGACTTTGAGGCCGTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATCTTGGATCTCTTTTGAAATTTATATG
CCATTACAGTACTAGAGTCACATTGTTACATCACCTCTACCTTCATAAGA
ACCAAAAGGACTTCAAACATGATTAAGGGATATGAGAGAAGCAGCAGACT
ATTAGTACACATGTGTTTGATTCATAAATGTGAGCCAAATTTATTTTACA
GATAGATAGATGAATGATAGATATGCTCTTTTGGCTGGGTAATGAAGGCT
GTATGAATCTCATTGTTANTTAACTGTAGTTGTCTGGAAGCAATAAACAA
GAGTGATTTTTACATATTGTTAGAATGTCATATGATAAAGTGTAACAAAA
CACTGAGGCCTGGGTTAGTTCATAAGCTGTTAGCACTGTATGCTCTAATA
CTAAATGTACTTGATTTTCAAATGAAGAAGCTGAAGACTAAAGAAACAGA
ACCGACTATCTCTTAAAATAGGATCCTCAGTATCCTTTAATCTATAGACT
GGTGCTCCTATAGACTTAGATATTTTAGAGTGGCTTTTGAAAAAGTCTAA
GCTCTTAACACTTTTTGGAAGGCAGAGGACATATGTTAGAAATCTTTATT
TTTTTTTCCCCCGATTTTTCCCTTAAATTAAATTAACTTCTTTCCATTCC
CTTTCTCGTAAAACCCCACCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_k08.b1 MSMg01no415_k08.b1 CHROMAT_FILE:
MSMg01no415_k08.b1 PHD_FILE: MSMg01no415_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:05 2005
         (245 letters)



>mm_chr16_65595608_65596252
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggatctattacatttcacattttccaagatgtcagtccttagtccttggctgcacaga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggatctattacattccacattttccaagatgtcagtccttagtccttggctgcacaga 260

                                                                       
Query: 61  ttctgggactgtggtgagcagattataaaggtggatgtatgtggaacaatctacactcct 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ttctgggactgtggtgagcagattataaaggtggaagtatgtggaacaatctacactcct 320

                                                                       
Query: 121 catgtcaaacaggatgtagaagaatggaagaagcctgggtgaaatatactctttaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtcaaacaggatgtagaagaatggaagaagcctgggtgaaatatactctttaaagac 380

                                                                       
Query: 181 acaccccagtagatgatgcaaaccaccttccagctttctgatagtctatttagaaaaaga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 acaccccagtagatgatgcaaaccaccttccagctttctggtagtctatttagaaaaaga 440

                
Query: 241 tccat 245
           |||||
Sbjct: 441 tccat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no415_k08.g1 MSMg01no415_k08.g1 CHROMAT_FILE:
MSMg01no415_k08.g1 PHD_FILE: MSMg01no415_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:05 2005
         (272 letters)



>mm_chr16_65797811_65798482
          Length = 672

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aactgtagttgtctggaagcaataaacaagagtgatttttacatattgttagaatgtcat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aactgtagttgtctggaagcaataaacaagagtgatttttacatattgttagaatgtcat 413

                                                                       
Query: 62  atgataaagtgtaacaaaacactgaggcctgggttagttcataagctgttagcactgtat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgataaagtgtaacaaaacactgaggcctgggttagttcataagctgttagcactgtat 353

                                                                       
Query: 122 gctctaatactaaatgtacttgattttcaaatgaagaagctgaagactaaagaaacagaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gctctaatactaaatgtacttgattttcaaatgaagaagctgaagactaaagaaacagaa 293

                                                                       
Query: 182 ccgactatctcttaaaataggatcctcagtatcctttaatctatagactggtgctcctat 241
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 ctgactatctcttaaaataggatcctcagtatcctttaatctatagactgttgctcctat 233

                                          
Query: 242 agacttagatattttagagtggcttttgaaa 272
           |||||||||||||||||||||||||||||||
Sbjct: 232 agacttagatattttagagtggcttttgaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)