BAC Information

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BAC

Clone NameMSMg01-417K13
Chromosome16 (Build37)
Map Location 28,063,317 - 28,247,131
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K13.T7 (MSMg01no417_k13.b1)MSMg01-417K13.TJ (MSMg01no417_k13.g1)
ACCAG513187AG513188
length744748
length of high quality
(start - end)		510 (70 - 579)493 (77 - 569)
definitionCHROMAT_FILE: MSMg01no417_k13.b1 PHD_FILE: MSMg01no417_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:36 2005CHROMAT_FILE: MSMg01no417_k13.g1 PHD_FILE: MSMg01no417_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,063,317 - 28,063,821)(28,246,639 - 28,247,131)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAGTTCGCTGATGAATCCAATAACGATAAATTGACCATGAA
AATATGATGTGAGAGAATCCATGGCAGAGAAATGATATTTTGTGTTACTG
TAAGTAGAGAAATGTGTTTTTATATAATACATAATAGTCTTTACTTTGTT
ATTCCTGAGTTAATGAGTACCAGGAAGAAGAGAAAGCCAATGTAGCTGAC
AGTATGGTAGAGCCTTGCCTGATGAATGATACTGATTGAAATCCATTTAT
ATCTATATAGTGCCATGTCTTTAAGTACCCATTTAGTAACTATTATCAAT
GCATGAAATCCCACAAAACAACCTAAGAAACAAACTGTTATTAACCTTAG
TGCAGACTGTATAACCTAGTTAATGTTCTCAGTCAGAGTAACTGTCATGA
GTTCCGTGTTTATCGTATCCACCCATGTCATACTATTTCATTCCCCGTGT
TTCTGTAACTTCTATGTATGTATAAGGATTGCTGTTTAAACTAAGTAGGT
TAACATGAGGTGTTTGCTATTCCACAAGAGACACCAGCTGTGCTCTGCAA
CAAAAAATGTTTATTTGAATGCCAGATTCTTTAGTTCTGTTCTCCTACCA
CCTATTGAGTCCCATCGACCCCTTGCTTTCTTTGCTGTTCAGGATGAAGT
CGCTGTACTATTGAGGCTCACTTTTTCATAACCTCACGTTCTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTCTCACTCCCTTTATATTCA
ATTATTAAGACATTTATCACCCAGAGCAATAAAACAAAATTACTGTACAT
TGAAGTCATAGGGTTGGAAACCAGAGGGTGCGTTAGGTCTGCTCTGCATT
TCCCTAGGCCCCAATTCCCTTCCTTCCAGACGATAGTTCTGAAGATTTCT
TTTTAAGCTCAACAACCTTAAGAATTAAATTTGATTTCTACGATAAAAAT
GACAAAGGGACAAGATAATTGTCTGGAGATTGTTTTCCACCCTGACTGCC
TAGGAAAAGTTGATTACTTCTTTTATGTGAAATTGTTCGCAGAAGGTTCT
GATTGTCTGGTATTTTAAAGGTATTGTGTGTTATAGGATATGGAGATATT
TTTATTTAAAGGGAAAGCAAGGATTTTAATATGTGGAAACAGTGTGATAA
AAATTGCATTTCTGAGAACAATGTGTAATTTCATTTACTTCCCAGGCAAA
GTGTGTGTGTGTGGTGGGGTCCCGTTNNCATTTGTCTTATATTTGATGCT
TAATCATTGATACAACCTTCCCACCTATTGCTCCATATATCGGATACCTC
TTTTTGAGGACCATGTGATTGGCCACGATTGACTCTTCTTTATTACTGTG
AGCGGTTGTCTCACTCTTTGTTCGCTTCGATATCGTCCCTCCTTCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k13.b1 MSMg01no417_k13.b1 CHROMAT_FILE:
MSMg01no417_k13.b1 PHD_FILE: MSMg01no417_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:36 2005
         (510 letters)



>mm_chr16_28063112_28064021
          Length = 910

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   tccaataacgataaattgaccatgaaaatatgatgtgagagaatccatggcagagaaatg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tccaataacgataaattgaccatgaaaatatgatgtgagagaatccatggcagagaaatg 265

                                                                       
Query: 66  atattttgtgttactgtaagtagagaaatgtgtttttatataatacataatagtctttac 125
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 atattttgtgttactgtaagtagataaatgtgtttttatataatacataatagtctttac 325

                                                                       
Query: 126 tttgttattcctgagttaatgagtaccaggaagaagagaaagccaatgtagctgacagta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttgttattcctgagttaatgagtaccaggaagaagagaaagccaatgtagctgacagta 385

                                                                       
Query: 186 tggtagagccttgcctgatgaatgatactgattgaaatccatttatatctatatagtgcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggtagagccttgcctgatgaatgatactgattgaaatccatttatatctatatagtgcc 445

                                                                       
Query: 246 atgtctttaagtacccatttagtaactattatcaatgcatgaaatcccacaaaacaacct 305
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 446 atgtctttaagtacccatttagtaactattatcaatgcacgaaatcgcacaaaacaacct 505

                                                                       
Query: 306 aagaaacaaactgttattaaccttagtgcagactgtataacctagttaatgttctcagtc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaaacaaactgttattaaccttagtgcagactgtataacctagttaatgttctcagtc 565

                                                                       
Query: 366 agagtaactgtcatgagttccgtgtttatcgtatccacccatgtcatactatttcattcc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agagtaactgtcatgagttccgtgtttatcgtatccacccatgtcatactatttcattcc 625

                                                                       
Query: 426 ccgtgtttctgtaacttctatgtatgtataaggattgctgtttaaactaagtaggttaac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccgtgtttctgtaacttctatgtatgtataaggattgctgtttaaactaagtaggttaac 685

                                    
Query: 486 atgaggtgtttgctattccacaaga 510
           |||||||||||||||||||||||||
Sbjct: 686 atgaggtgtttgctattccacaaga 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_k13.g1 MSMg01no417_k13.g1 CHROMAT_FILE:
MSMg01no417_k13.g1 PHD_FILE: MSMg01no417_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:36 2005
         (493 letters)



>mm_chr16_28246439_28247331
          Length = 893

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttctcactccctttatattcaattattaagacatttatcacccagagcaataaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atcttctcactccctttatattcaattattaagacatttatcacccagagcaataaaaca 634

                                                                       
Query: 61  aaattactgtacattgaagtcatagggttggaaaccagagggtgcgttaggtctgctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 633 aaattactgtacattgaagtcatagggttggaaaccagagggtgcattaggtctgttctg 574

                                                                       
Query: 121 catttccctaggccccaattcccttccttccagacgatagttctgaagatttctttttaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catttccctgggccccaattcccttccttccagacgatagttctgaagatttctttttaa 514

                                                                       
Query: 181 gctcaacaaccttaagaattaaatttgatttctacgataaaaatgacaaagggacaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctcaacaaccttaagaattaaatttgatttctacgataaaaatgacaaagggacaagat 454

                                                                       
Query: 241 aattgtctggagattgttttccaccctgactgcctaggaaaagttgattacttcttttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattgtctggagattgttttccaccctgactgcctaggaaaagttgattacttcttttat 394

                                                                       
Query: 301 gtgaaattgttcgcagaaggttctgattgtctggtattttaaaggtattgtgtgttatag 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 393 gtgaaattgttcgcagaaggttctgattgtctggcattttaaaggtattgtgtgttatag 334

                                                                       
Query: 361 gatatggagatatttttatttaaagggaaagcaaggattttaatatgtggaaacagtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gatatggagatatttttatttaaagggaaagcaaggattttaatatgtggaaacagtgtg 274

                                                                       
Query: 421 ataaaaattgcatttctgagaacaatgtgtaatttcatttacttcccaggcaaagtgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ataaaaattgcatttctgagaacaatgtgtaatttcatttacttcccaggcaaagtgtgt 214

                        
Query: 481 gtgtgtggtgggg 493
           |||||||| ||||
Sbjct: 213 gtgtgtggcgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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