BAC Information

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BAC

Clone NameMSMg01-417L01
Chromosome16 (Build37)
Map Location 42,045,631 - 42,226,212
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L01.T7 (MSMg01no417_l01.b1)MSMg01-417L01.TJ (MSMg01no417_l01.g1)
ACCAG513211AG513212
length756758
length of high quality
(start - end)
600 (48 - 647)539 (78 - 616)
definitionCHROMAT_FILE: MSMg01no417_l01.b1 PHD_FILE: MSMg01no417_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:39 2005CHROMAT_FILE: MSMg01no417_l01.g1 PHD_FILE: MSMg01no417_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,045,631 - 42,046,226)(42,225,678 - 42,226,212)
sequence
NGTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCAAAGGCCTTAACATTTAAGTCTTTATCAGGTAAGGTTAA
AAGTTCACTATGATTTACCTCTCTCCTTTGGTAGACAGATCGCTTCCTGT
CTCTACCTTGTGCCTGTTCTAACAACATCTGCACCTGCTGGTATTTCATG
TCTCCATTTGAATTAGATTTTTCTTGCCTCTATGACTTTAACATTAATAA
TTATTCATCATCATCATAGTCATCACAATTATTATTATTAGTGTTGTTGC
CACTACTATCTGAGAAGTAAAATGTCACCAAGGACAGCCTTCTTGTGTCC
CTGCCTTTTAAAAGCTGGGACTGCAGGCTTTTGCACCACACTCATCTGGT
GATGTAAAGCAAGCACAGCTTTAAATCATTTAAGTGGATATTCTGAAGTC
AGATAGTTAAGAGAATTCAAGAGACATGCTAGACTGCTATTTTGTTGTTC
ATTTTATGCTCCTCCCTCTTTTGAAATTTTCCCTGAGCCTTTGAAGAGAT
GATGTAAAATATCTTGCTCAAGAATTCAACCATTACTTATTCTCAGNACT
TTGTTCAGCCATGAGTCTCTACATTCACTGCTCTTCATTGGAAAGAAAAA
AAATTCTCTAATTAAGGTTGAGAAAGTACTATTTGTCTATGTATTAAACA
TAAATATTTAAAAGCAAATTCATCCTATGCCAATTTACCTAAAGAAAATT
TCATTN
NTCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCGTTTTTTTGTTTTGTTTTTG
TTTGTTTGTTTGTATTTGTTCCCTTAGATGAGAGTCTAAAAGCTCAAAAG
GACAATAAGAAATTGCTGTGGAGGGACTTGGGGAAAGGTAGTTACTGAGA
CTGCAGCGTGAACTACCTTCACATTTGTTCAAACAGCACCTTCTCATGGC
TGCCTCTGCTCTCCTGGTTCCTTGCTCTGTGTGACCAGCTGTCTCCTCTC
AACAATTGTTGTAGTAACAACAATCTCATAGTAAAATACCAGACCCTGAG
CAAGTCTAAAAATAATAAGCTCGTGGGTAATTTGAGTTCTGACTCGCTAA
AATGAAAACTGTATGTATGCATATATAAATGCACAGTAAAAAGAAACTTC
ATATAAATGGAATAGTATCTACATATTACTTATACATATATTTGTTACTT
ACAAAGTTAAATATAATGTTAATTGTATATAAATATTTACTTTATACCTT
GCTGCTTGGGAAATAATTGCAAGAATTGAATGAACATCTATACCCATAAA
GAACAGATTTTCTTGTCTTATTTATGATTTGCTTTTACCTGCATTGGTGG
TTTACCTTCATGGATGTCCGGGTGAAAATCCCCTGGAGATGAAGTTCCGA
CCGCTCCGGACTGTCCTGCTGGGATTTGTACCCCCGCAAACCTGGCAGAA
CATCTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l01.b1 MSMg01no417_l01.b1 CHROMAT_FILE:
MSMg01no417_l01.b1 PHD_FILE: MSMg01no417_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
         (600 letters)



>mm_chr16_42045427_42046426
          Length = 1000

 Score = 1116 bits (577), Expect = 0.0
 Identities = 591/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcaaaggccttaacatttaagtctttatcaggtaaggttaaaagttcactat 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcaaagggtttaacatttaagtctttatcaggtaaggttaaaagttcactat 264

                                                                       
Query: 65  gatttacctctctcctttggtagacagatcgcttcctgtctctaccttgtgcctgttcta 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 gatttacctctctcctttggtagacaggtcgcttcctgtctctaccttgtgcctgttcta 324

                                                                       
Query: 125 acaacatctgcacctgctggtatttcatgtctccatttgaattagatttttcttgcctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacatctgcacctgctggtatttcatgtctccatttgaattagatttttcttgcctct 384

                                                                       
Query: 185 atgactttaacattaataattattcatcatcatcatagtcatcacaattattattattag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgactttaacattaataattattcatcatcatcatagtcatcacaattattattattag 444

                                                                       
Query: 245 tgttgttgccactactatctgagaagtaaaatgtcaccaaggacagccttcttgtgtccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttgttgccactactatctgagaagtaaaatgtcaccaaggacagccttcttgtgtccc 504

                                                                       
Query: 305 tgccttttaaaagctgggactgcaggcttttgcaccacactcatctggtgatgtaaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccttttaaaagctgggactgcaggcttttgcaccacactcatctggtgatgtaaagca 564

                                                                       
Query: 365 agcacagctttaaatcatttaagtggatattctgaagtcagatagttaagagaattcaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcacagctttaaatcatttaagtggatattctgaagtcagatagttaagagaattcaag 624

                                                                       
Query: 425 agacatgctagactgctattttgttgttcattttatgctcctccctcttttgaaattttc 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 agacatgctagactgctattttgttattcattttatgctcctccctcttttgaaattttc 684

                                                                       
Query: 485 cctgagcctttgaagagatgatgtaaaatatcttgctcaagaattcaaccattacttatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctgagcctttgaagagatgatgtaaaatatcttgctcaagaattcaaccattacttatt 744

                                                                   
Query: 545 ctcagnactttgttcagccatgagtctctacattcactgctcttcattggaaagaa 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcagtactttgttcagccatgagtctctacattcactgctcttcattggaaagaa 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_l01.g1 MSMg01no417_l01.g1 CHROMAT_FILE:
MSMg01no417_l01.g1 PHD_FILE: MSMg01no417_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
         (539 letters)



>mm_chr16_42225474_42226412
          Length = 939

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tttttttgttttgtttttgtttgtttgtttgtatttgttcccttagatgagagtctaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttttttgttttgtttttgtttgtttgtttgtatttgttcccttagatgagagtctaaaa 680

                                                                       
Query: 65  gctcaaaaggacaataagaaattgctgtggagggacttggggaaaggtagttactgagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctcaaaaggacaataagaaattgctgtggagggacttggggaaaggtagttactgagac 620

                                                                       
Query: 125 tgcagcgtgaactaccttcacatttgttcaaacagcaccttctcatggctgcctctgctc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgcagcgcgaactaccttcacatttgttcaaacagcaccttctcatggctgcctctgctc 560

                                                                       
Query: 185 tcctggttccttgctctgtgtgaccagctgtctcctctcaacaattgttgtagtaacaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcctggttccttgctctgtgtgaccagctgtctcctctcaacaattgttgtagtaacaac 500

                                                                       
Query: 245 aatctcatagtaaaataccagaccctgagcaagtctaaaaataataagctcgtgggtaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatctcatagtaaaataccagaccctgagcaagtctaaaaataataagctcgtgggtaat 440

                                                                       
Query: 305 ttgagttctgactcgctaaaatgaaaactgtatgtatgcatatataaatgcacagtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgagttctgactcgctaaaatgaaaactgtatgtatgcatatataaatgcacagtaaaa 380

                                                                       
Query: 365 agaaacttcatataaatggaatagtatctacatattacttatacatatatttgttactta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaaacttcatataaatggaatagtatctacatattacttatacatatatttgttactta 320

                                                                       
Query: 425 caaagttaaatataatgttaattgtatataaatatttactttataccttgctgcttggga 484
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 caaagttaaatataatgctaattgtatataaatatttactttataccttgctgcttagga 260

                                                                  
Query: 485 aataattgcaagaattgaatgaacatctatacccataaagaacagattttcttgt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aataattgcaagaattgaatgaacatctatacccataaagaacagattttcttgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)