BAC Information

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BAC

Clone NameMSMg01-418A13
Chromosome16 (Build37)
Map Location 81,806,799 - 81,807,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039724, Ncam2, LOC621470
Downstream geneLOC435484, Pgk1-ps1, EG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418A13.T7 (MSMg01no418_a13.b1)MSMg01-418A13.TJ (MSMg01no418_a13.g1)
ACCAG513471AG513472
length734791
length of high quality
(start - end)
467 (72 - 538)580 (126 - 705)
definitionCHROMAT_FILE: MSMg01no418_a13.b1 PHD_FILE: MSMg01no418_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:07 2005CHROMAT_FILE: MSMg01no418_a13.g1 PHD_FILE: MSMg01no418_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGANAGTCTCTCAACCTGGTAGCCACAGTAAATAATAATTTT
TTCATACTTTATTTCTTTAGAAGTCTTATTATCCATTCTTGGCATACAGG
CAACTATCANAGACTTCTCTACTACGTAGTCATTGCTTCTTGTATTATAA
TATTGGTAGAAGAAAATGTTTTACTTTACATGCATAAACAGAATCTTCCA
TTGCATGTTAAACTTTTTTCAGACCACTTTGACAAGGATGGGAATCACAG
TAGAGTCCACTGTATAGTTTTATTTTTCCTCCAGCATGTTGTCTTCCTAT
TCTCTTGTCATTGAAGATGTTGACTTAGAGCTTTAAAGCATACTTAGTTT
CTCAGTCTCCCACTCAACAAAATGTACATTACTTGAGGTGACCCTAAGCC
TTTTCTGTCTTCAGTCAATTACTGCTAGATATACCTCATTTTTAATTCTG
ACTTTCTCATGCTCTCAGACTAACCCATAACTTCTGAGTGGCTGCTCCTC
TCAACATAGTTTAAAAAAACTTTGTTGCAATATCCCCTTGCTGTGAAATA
GGTTCGCTTGTCTGTTTATTTGTTCGTTTTGCTTTCGACTTTTGCATATC
TTCATACCTTTATTTTCATTACCCTTTAAACCATTACTATTTCTGGCTTC
GTTTTATATGCCGTCCACCTTTGTGCCCCTTTGT
GAAGGATGGGAGGGAGGGAGGAGGGAGNTGGGGGGGNGNNGNTGGTCGAG
TGAGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGTGCAACACACA
CAAACTTATGGAACATAAGGAAAGCAGCATTAAGAGGAAAATTCATAATA
CTAAGTGCCTTAAAAAAGAAATTGGAGAATTCCCATACTAGCAATTTAAC
AGCACAACTGAAATCTCTAAAACAGAAAGAAGCAAACACAATCAGGAGGA
GTAGATCACGGGAAATAATGAAACTCAGGAATGAAATCAACCAATTAGAA
ACAAAGAGCACAATACAAAGAATCATCAGAATCAAGAATTGGTTATATAA
GAAAATAACCAAGATAGACTGTAGAATGTAGTTAAAAAATATAATACTGG
CTAGGCACCAACAATGGTAGTCTCCCCACCCCCCATGGGGAGCCACAAGC
AGCAGTCTTCCCTGGTTCCCATGGTTTGCTGCTACCAAACAGCTTGAACT
TCCCAAGCCATCCATTCCCTATTGCAAACCTGTAGAAACTGGCCACTGCT
GGCACTGATCCCATATCCCTAAATGAACATCTCAGAGGTTTGTAATTTAA
CAGTCAGATTTATATCAGTAAATCATCAACCCCAAATTGCCCTCACAAAC
AACCCAAAACTCAATTGATAGTGGTACATCTAGATTGAACAAATGTACCC
TACATTACTCATTCTTCTATGAAATCCTTAGTTACCTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_a13.b1 MSMg01no418_a13.b1 CHROMAT_FILE:
MSMg01no418_a13.b1 PHD_FILE: MSMg01no418_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:07 2005
         (467 letters)



>mm_chr16_81806599_81807464
          Length = 866

 Score =  804 bits (416), Expect = 0.0
 Identities = 454/467 (97%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctggtagccacagtaaataataattttttcatactttatttctttagaagtcttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acctggtagccacagtaaataataattttttcatactttatttctttagaagtcttatta 607

                                                                       
Query: 61  tccattcttggcatacaggcaactatcanagacttctctactacgtagtcattgcttctt 120
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 606 tccattcttggcatacaggcaactatcaaagacttctctactacatagtcattgcttctt 547

                                                                       
Query: 121 gtattataatattggtagaagaaaatgttttactttacatgcataaacagaatcttccat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 gtattataatattggtagaagaaaatgttttactttacatgcataaacagaaccttccat 487

                                                                       
Query: 181 tgcatgttaaacttttttcagaccactttgacaaggatgggaatcacagtagagtccact 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgcatgtaaaacttttttcagaccactttgacaaggatgggaatcacagtagagtccact 427

                                                                       
Query: 241 gtatagttttatttttcctccagcatgttgtcttcctattctcttgtcattgaagatgtt 300
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtatagtttcatttt-cctccagcatgttgtcttcctattctcttgtcattgaagatgtt 368

                                                                       
Query: 301 gacttagagctttaaagcatacttagtttctcagtctcccactcaacaaaatgtacatta 360
           ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gacatagtgctttaatgcatacttagtttctcagtctcccactcaacaaaatgtacatta 308

                                                                       
Query: 361 cttgaggtgaccctaagccttttctgtcttcagtcaattactgctagatatacctcattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttgaggtgaccctaagccttttctgtcttcagtcaattactgctagatatacctcattt 248

                                                          
Query: 421 ttaattctgactttctcatgctctcagactaacccataacttctgag 467
           |||| ||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 247 ttaaatctgactttctcatgctctcaaactaaaccataacttttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space:   391192
Effective search space used:   391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)