BAC Information

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BAC

Clone NameMSMg01-419H07
Chromosome16 (Build37)
Map Location 59,513,023 - 59,513,516
singlet/doubletsinglet
Overlap geneBC043118
Upstream geneSt3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina
Downstream geneLOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H07.T7 (MSMg01no419_h07.b1)MSMg01-419H07.TJ (MSMg01no419_h07.g1)
ACCAG514553AG514554
length742760
length of high quality
(start - end)
242 (255 - 496)494 (72 - 565)
definitionCHROMAT_FILE: MSMg01no419_h07.b1 PHD_FILE: MSMg01no419_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:00 2005CHROMAT_FILE: MSMg01no419_h07.g1 PHD_FILE: MSMg01no419_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTAAAATTGTGGGGGGGAAAGAGAACTAAATCGAGAGAGGCGNGN
AAAACNNTGCTACTCCAAAAGACCAGTTTTTAAAGGGGGGATATGAGATT
CTGAAGACTACCCTCTCGAGATCTCTATATATGTGGGAGATAAGACCCCC
ATCTGAGATTTGAGAGGGGAAGAGACCCTTCCCAACTGTGGGGGGGCTCT
TTGTGTTATATGAGACGGGCCTTTGGCCTGGCAAAAATTTGGAAGTTTCT
TTAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCTCNGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTTTCGAAGATCAAGT
GACCATAGGCGTGGTGGGTTCATTTCTGGGCCCTTCAATTCAATTCCCAT
GGGCCACCTGTCTGGCTCTATACCAATAACACGGCGCTTTTATTATTATT
GTTCTGTAAAAAAAGCTTAGCCCGGCCCGGGGATTTCCCCTGAAAATCCC
CCCCCCTTGAAAACAACTTTTTCTTCCCTCAAATCCCCTTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGTCTTACAATCCTAGAGGGAGCCGTG
CAGATTAATATTATTCACATGCAGCTAGTGGGCGAAGTGCAGTTACAGTG
GGGGCAGTGTGAGGGCATTCATTGTAGCACTGGGAGATAAAACAGTAGCA
CATTCAAATAATAAAGTGTACAGCATAGAGTTAGCAGAAGGCAGCTGTGT
GCGTGAACACTTTCAACACCAAAGGCAAGAAAAGCAGGCTACCTCAGGAA
CTGAGTTTAAATCAGCTGTACTCAATAGATCTCATTTGCTTAAATTTTTG
GTACACGTTTTGTATATTGTTAAATACTATTCAGTACATGTTGCATTAAA
ATATTAGGCTTGATAGTTTCATGTTCAAGGACGTTTAAATGCTAGTACTC
GTGACTCGATCATTCAGTGAGCCTAATAAATTTGTACACATGATTTGTCA
ATTAAAGTTAATAAATACAAATGGGAAATCTTGATATAATACTTGTGGAT
GTTGGGTGGATGGTCAAATGTTATGTTATTTGCTCTTTCAGAAATGAATT
GTAACTTATCTAAAAAGGGGGGGGGCGCAAGCATGATAAACTGAAACCTA
TTTTACCTATATAAAAGGGAACGGGGCTCTGTTATGAAGGGTTCTGTTTG
AAAATTCGCCTTGTTTGTTTTGAAAAAACCCTCGTTTTCTCTTTTTATAC
CCTCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h07.g1 MSMg01no419_h07.g1 CHROMAT_FILE:
MSMg01no419_h07.g1 PHD_FILE: MSMg01no419_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:00 2005
         (494 letters)



>mm_chr16_59512823_59513716
          Length = 894

 Score =  932 bits (482), Expect = 0.0
 Identities = 491/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtcttacaatcctagagggagccgtgcagattaatattattcacatgcagctagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 actgtcttacaatcctagagggagccgtgcagattaatattattcacatgcagctagtgg 635

                                                                       
Query: 61  gcgaagtgcagttacagtgggggcagtgtgagggcattcattgtagcactgggagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gcgaagtgcagttacagtgggggcagtgtgagggcattcattgtagcactgggagataaa 575

                                                                       
Query: 121 acagtagcacattcaaataataaagtgtacagcatagagttagcagaaggcagctgtgtg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 574 acagtagcacattcaaataataaagtatacagcatagagttagcagaaggcagctgtgtg 515

                                                                       
Query: 181 cgtgaacactttcaacaccaaaggcaagaaaagcaggctacctcaggaactgagtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cgtgaacactttcaacaccaaaggcaagaaaagcaggctacctcaggaactgagtttaaa 455

                                                                       
Query: 241 tcagctgtactcaatagatctcatttgcttaaatttttggtacacgttttgtatattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcagctgtactcaatagatctcatttgcttaaatttttggtacacgttttgtatattgtt 395

                                                                       
Query: 301 aaatactattcagtacatgttgcattaaaatattaggcttgatagtttcatgttcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaatactattcagtacatgttgcattaaaatattaggcttgatagtttcatgttcaagga 335

                                                                       
Query: 361 cgtttaaatgctagtactcgtgactcgatcattcagtgagcctaataaatttgtacacat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 334 cgtttaaatgctagtactcgtgactctatcattcagtgagcctaataaatttgtacacat 275

                                                                       
Query: 421 gatttgtcaattaaagttaataaatacaaatgggaaatcttgatataatacttgtggatg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gatttgtcaattaaagttaaaaaatacaaatgggaaatcttgatataatacttgtggatg 215

                         
Query: 481 ttgggtggatggtc 494
           ||||||||||||||
Sbjct: 214 ttgggtggatggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)