BAC Information

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BAC

Clone NameMSMg01-420D03
Chromosome16 (Build37)
Map Location 97,782,640 - 97,783,118
singlet/doubletsinglet
Overlap genenone
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneTmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420D03.T7 (MSMg01no420_d03.b1)MSMg01-420D03.TJ (MSMg01no420_d03.g1)
ACCAG515118AG515119
length864731
length of high quality
(start - end)
44 (76 - 119)479 (73 - 551)
definitionCHROMAT_FILE: MSMg01no420_d03.b1 PHD_FILE: MSMg01no420_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:57 2005CHROMAT_FILE: MSMg01no420_d03.g1 PHD_FILE: MSMg01no420_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGAACCCATATTTGCGGCGCTATANGAGTCANTATTTCCGNAGTGCGCG
GAAATCTGNGTCTTTCTTNCCACGGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGATTTAGACCCAGAGAGAGAGAGAGAGAGAGAGAGT
ACGCGCTCCCCCTTCTTCTTCCTGCGCGCCCCTTCTCCTTTCTTTTTTTT
CCTTTCCCCTTCCCTCTCCCCTCCTTTTTTCCTTTCCCCACCCCCCCCGA
CTCCTTTTTTTTTCTTCTTCCACCCTTTTCCCCTTCCCCCCCCTTCCCCC
CTCCCTTCTTTCCCCCCCCCCCCCTTTTTTTTCTTTTTTTAACCCCCACN
CACCCCCCCCCCAAGAACACGCCCTTTCCCCCTTANTATCTTTTATCCCC
CCCCCCCTTTTTTCTTTCCTTTCTTTCTCCCCCCTTCATTCCCGTTCCCC
CCCCCTTTCTTTTTCTCTCCCTTGTCCTCTCCCTTTTTTTTCCCTTTCCC
CCTTTTCCCCTCCCCCTCCCCTCTCCTTCTCCCCCCTCTCTTTTTTTTTC
CTTCTCTTCCCTTTCTTTTTTCCCCCCTCTCCCCTTTTTTTTCCCTCCCC
CTTTCCCCCCCCCCCCTTCTCCTTTCTCCCTTTTTTCCTTCCTTTTTTCC
CCCCCCCCTTTCTCTCCCCTCTTTTTTTTTTATTTCTCTCCCACTTTCCC
CCCGCTTCTCCCATTTTCCTTCCCCACCNTCCTCCCCTCTCCTTCTCTCC
ACAATCCCCCCCTCCTTTTTCTCCCTTTCCCTCTCCTTATCTGCAGCTTC
CCAGCGCCCCCCCCCCGTTTCTTACCCCCCTCTTTTTCCCTTCTCCTCCC
CCTCCCTTCTTCTT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACTGTGCCTTGTGTTCTTCATCGTGT
TTCTTGTAGAATGTCCCTCAGCTCCTTGTTCCTCTCCCTCCCTACTGGGA
GCATCTTCTCCTTCCTGGGTCCGGTATTCCAGATGCTTCAGTGCTTCAAT
GAACCTGGGCATCTGACTTCAGCTAGTTCTGTGACCTAAGGCTTCTTAAA
CACGAAGTCAGGAAGTGCTGTGTATATTTGGAGCCGGGTTCTGGGAGAGC
CAATCTGAGGGTTAGGCTTATCTACTCATCTCCTAGTCATGGAGGGACTC
TGCAGCTCTTCAGGGAGAGTATGGTTCCCTAACTGACCTGGTCCTACCCT
GGATGGTTTTTCTACTGCAGCTGTGAATGCAGAACCTCCAACAGCTGCTC
ACACTGAGACTGCTTAGTATTCCCTGCAGACCATTGCCCATGTGCACAAA
GTATGTGCACACATGTTTGATAGTTTGTCTTTCCAAGCTTGTTTTCACTT
GCTGCGGTCCTTAGGAAGTAAACCCTCCTTGGCTCCCAATTCCTAGGTGC
CTTTAGTCATTCCCTTTTTTTTCTCCACATTTGTCCCTCCACCCCTCTTG
TATCCTTGTGTAATACCCTTCCCCATTTTCAAACTGATTCTTAAACAAAA
GCGCTTTTACTTAATGATTGTTCTCCCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_d03.g1 MSMg01no420_d03.g1 CHROMAT_FILE:
MSMg01no420_d03.g1 PHD_FILE: MSMg01no420_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:57 2005
         (479 letters)



>mm_chr16_97782440_97783318
          Length = 879

 Score =  880 bits (455), Expect = 0.0
 Identities = 473/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactgtgccttgtgttcttcatcgtgtttcttgtagaatgtccctcagctccttgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcactgtgccttgtgttcttcatcgtgtttcttgtagaatgtccctcagctccttgttcc 620

                                                                       
Query: 61  tctccctccctactgggagcatcttctccttcctgggtccggtattccagatgcttcagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 tctccctccctactgggagcatcttctccttcctgggtccggtattccggatgcttcagt 560

                                                                       
Query: 121 gcttcaatgaacctgggcatctgacttcagctagttctgtgacctaaggcttcttaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcttcaatgaacctgggcatctgacttcagctagttctgtgacctaaggcttcttaaaca 500

                                                                       
Query: 181 cgaagtcaggaagtgctgtgtatatttggagccgggttctgggagagccaatctgagggt 240
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgaagtcaggaagtgctgtgtagatttggagccgggttctgggagagccaatctgagggt 440

                                                                       
Query: 241 taggcttatctactcatctcctagtcatggagggactctgcagctcttcagggagagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taggcttatctactcatctcctagtcatggagggactctgcagctcttcagggagagtat 380

                                                                       
Query: 301 ggttccctaactgacctggtcctaccctggatggtttttctactgcagctgtgaatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggttccctaactgacctggtcctaccctggatggtttttctactgcagctgtgaatgcag 320

                                                                       
Query: 361 aacctccaacagctgctcacactgagactgcttagtattccctgcagaccattgcccatg 420
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 319 aacctccaacagctgctcacactgagactgctttgtactccctgcagaccattgcccatg 260

                                                                      
Query: 421 tgcacaaagtatgtgcacacatgtttgatagtttgtctttccaagcttgttttcacttg 479
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcacaaagcatgtgcacacatgtttgatagtttgtctttccaagcttgttttcacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)