BAC Information

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BAC

Clone NameMSMg01-420E05
Chromosome16 (Build37)
Map Location 96,474,753 - 96,475,213
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr
Downstream geneB3galt5, Jam4, Itgb2l, Pcp4, Dscam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E05.T7 (MSMg01no420_e05.b1)MSMg01-420E05.TJ (MSMg01no420_e05.g1)
ACCAG515170AG515171
length751736
length of high quality
(start - end)
449 (112 - 560)457 (65 - 521)
definitionCHROMAT_FILE: MSMg01no420_e05.b1 PHD_FILE: MSMg01no420_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:03 2005CHROMAT_FILE: MSMg01no420_e05.g1 PHD_FILE: MSMg01no420_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCAATACGAANACCANATCGGTATCTGGGCGGAANNCANANGACTTGCA
AAAACCCGCATGTGAAGGGATATGAAAATTATGATTATATTCACATTCAA
CATTAGACCATCAGAATACATAAAGTCTGGGCTACAACAATGTTCCATAG
ATGCTTACCTTTTATAAGCTGTAAAGTTATAGGCAATGCAAGCTTTAAAG
CAGCTATAATTGTTGAAGAGATTAACATCGTTAAAGGGAAAATACTTGTT
TTTACACTAGGACAGCATCTTGTAAAAATGCAAGTTGACTTGTAAGGAAA
ATCCTTATTGATAATGCTATTGGGCAGGTTTTCTACCAACCAACTAAACA
ACCAATGAACCAATTAATCAATGAACCAGCCAACCCACCCACCCACCCAC
CAGCCAACCATCAACCAACCAACCAACCAATGAACCAACGAACCAATGAA
TCAACTAACCCACCAACCAATCAACTCACCAACCAGCAAAACAACTAACC
CACCAATCAAGCCATCAACCGACCAACCCACCTACCTACCCATTCATCCA
CCCACCTACCCACCAACTAACCAACCAACCCACCAACCAATCAAGCAATA
AACCAAGCAACCTACCCACCAACAAACCCACCCACCCACCCCCCTATTAA
TCATCCCACCAAACCACCAACCCACTAACCCTTCTTACAACCAATCAATC
AAAGGAACCAACCAACCAAGGAAACAACTAATCCTCCAACTTAAAATACT
G
GTGAGAGGCCTGGNGGNCGCCTGTTTCACAAATGGAGGTGACCTATAGAA
GTTACGCAGAAATCACAGCAGTGATGACTGCCTGGACAAGGCTTGTACAA
GACCAAGCTCAGTCAATATCACAGCATGGAAGGCATCCAGGACAGTTTCA
TGTCAACTTGACACAAGTATGATCATCAGAGAGGTGGAAGCCTCAATTAA
GAAAATTATCTCCATGAGATTAGGCTGTAGACAAACCTGTAGGGTATTTT
CTTAGTTAGTGACTGACGGGAGAGGACCCAGTCCATTCCATCCCTGGGCT
AGTGGTCTTGTGTTTATAAGAAAGCAGGCTATGCAAACCATGAGAAGCAA
GGCAGTAAGCAGCATCCCTCCATGGCCTTGGCATCAGCTCCTGCCTCCAA
GTTCCTGCCCTGTTTGATTTCCTGTCTTGGCTTCTTTTAGTGATGGACTT
CAATGTGGAAGTGTTAGCCCCTGGTAAGTTGTCCATTTTCCAGTGGACGG
CCCCCCACAACCATCCATATACAGCAGAACTGGTTGAAAACGAACAGGGC
ATGAAGTTGGAATGGCAAGTTGGGAGGTCTGCTAGGAGTCAGAGGAGGCT
TCACTATCACAGATTGTATCCTAGCACATTGTGCCCCCCTACGAAATCCT
TCTTTTTTGAATTAAAAATACCACATAACAAAATTACAATACCCGGCGTT
TCGGCCTATTCATTCGCCTTATTAAATTATTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e05.b1 MSMg01no420_e05.b1 CHROMAT_FILE:
MSMg01no420_e05.b1 PHD_FILE: MSMg01no420_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:03 2005
         (449 letters)



>mm_chr16_96474553_96475401
          Length = 849

 Score =  799 bits (413), Expect = 0.0
 Identities = 444/461 (96%), Gaps = 12/461 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatacataaagtctgggctacaacaatgttccatagatgcttaccttttataagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatacataaagtctgggctacaacaatgttccatagatgcttaccttttataagctg 260

                                                                       
Query: 61  taaagttataggcaatgcaagctttaaagcagctataattgttgaagagattaacatcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagttataggcaatgcaagctttaaagcagctataattgttgaagagattaacatcgt 320

                                                                       
Query: 121 taaagggaaaatacttgtttttacactaggacagcatcttgtaaaaatgcaagttgactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagggaaaatacttgtttttacactaggacagcatcttgtaaaaatgcaagttgactt 380

                                                                       
Query: 181 gtaaggaaaatccttattgataatgctattgggcaggttttctaccaaccaactaaacaa 240
           |||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaggaaaatccaaactgacaatgctattgggcaggttttctaccaaccaactaaacaa 440

                                                                       
Query: 241 ccaatgaaccaattaatcaatgaaccagccaacccacccacccacccacc--------ag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||        ||
Sbjct: 441 ccaatgaaccaattaatcaatgaaccagccaacccacccacccacccacccacccaccag 500

                                                                       
Query: 293 ccaaccatcaaccaaccaaccaaccaa----tgaaccaacgaaccaatgaatcaactaac 348
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 501 ccaaccatcaaccaaccaaccaaccaaccaatgaaccaacgaaccaatgaatcaactaac 560

                                                                       
Query: 349 ccaccaaccaatcaactcaccaaccagcaaaacaactaacccaccaatcaagccatcaac 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaccaaccaatcaactcaccaaccagcaaaacaactaacccaccaatcaagccatcaac 620

                                                    
Query: 409 cgaccaacccacctacctacccattcatccacccacctacc 449
           ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cgaccaacccacctacctacccattcacccacccacctacc 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)