BAC Information

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BAC

Clone NameMSMg01-420E21
Chromosome16 (Build37)
Map Location 26,861,853 - 26,862,158
singlet/doubletsinglet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E21.T7 (MSMg01no420_e21.b1)MSMg01-420E21.TJ (MSMg01no420_e21.g1)
ACCAG515201AG515202
length792770
length of high quality
(start - end)
304 (381 - 684)179 (63 - 241)
definitionCHROMAT_FILE: MSMg01no420_e21.b1 PHD_FILE: MSMg01no420_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:06 2005CHROMAT_FILE: MSMg01no420_e21.g1 PHD_FILE: MSMg01no420_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCCCGTTTGCTGTCTTACCCCCCAAAAAACACCGAAAAAAAAACCA
CTTATATTTGCGGCCGCTAAGAGACNCACAAATTTTCAAAACAGGGGCGG
AANNCNNNGNTCTTACCAAAAAACAGTTTTNAAAGGGGNNATTTGATTTA
ATAATGGCTTTTTGCAATGGGCACACCTGAGTTCCCCAGGATGCTGGCAA
TAATTAATCACACAGAACACTTTCCTTCCTAGAAAATTATATTAATTTCA
TTGGCTTGAATGAAAAAAATAACTCATTATTATTTAACAATCTCCTTCCA
TTAATGTTTTCAAGTGTGAAACAATTAGTTAAATGAAATATCTAGTTAAA
GAAATATAACAAAGTTACCACCTTTATTTATATACAGACATGACTTTCCT
ACATCTGTGATACAGAGGCTATGATTTATAATGTAAGGACCTTCCTATTT
CAGACCACTTGTGTCTGAAAATTTCAGACACTTCCTATTTCAGTTCCATT
TGTTCTAAGCAAGCCAGGGATGTTCTTACACTTAAACTGGTTTCAACATT
GTGTTAATCCATTGTTTCACATAATTCTAGACATTAATATGACTTCATGA
AGATTAAAGATACCACCAGCACTCTGTCTCTATTTCTACTCATTTATTAC
AATTCTGGCTTTTATCTTCACTGACAATCTCATGTCACAGAGACCCCTGG
TGCATCAAGTTTGCCTTCTGTAGCTCTGTAATTTGGGGCAATGAATGTCA
TGCTTTCCGAATGAGTCCAGTGCATCCTTAAGTAAATTCATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATTACCATGTAAGAGATGCACTTGCATATTAATACTT
ACTATAGTACTATTCCCAATAAATTATGAAACAATGCTAGTTGTCCAACA
ACAGAAGGGTGGATAATGAAAATGTAATAAGTATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATACATATATATAT
ATGTATACACCACAATACAGAGGTGGGGTTGCACACGTTGATACAGATAC
TATGGGATATGGACTCATACTGTGCGAGAATGTGTGTGTGCCTCTCACTC
TTATGCGGGAGATGGCGTGTATATATATACAGACCTGTCTATAAGTGTGT
GTCTCCGCGTGCGTGAGACTGTGACCCTATAATACAGGTGCGCCTGGGGT
AGAGATATATATANATATTTTTTCTGAACTTTACAACTGTANACTGCTAC
AATTAAAAACTGTAATATAAATATCTGATATATGAGATGTCTGAGATTTG
ACTCCTATAGAAAGATCATTTGACCCACCCCCCAAGGAGTCTTGATCCCC
AGGGTGAAAATCCCCAGCCTATGGGGGAAGGGGACCAGAGGGGGGATATT
CAAGTGGAGAAAGGGGGGGTTTCTCTTTTGGCCCCCCTGAGGGAAACCCC
GAACCCCCCTCCCGGGTGGGGAGAAAACTAAACACCCGGCCCCCAATAAG
GGCGTCGGGCGGCCGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e21.b1 MSMg01no420_e21.b1 CHROMAT_FILE:
MSMg01no420_e21.b1 PHD_FILE: MSMg01no420_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:06 2005
         (304 letters)



>mm_chr16_26861653_26862358
          Length = 706

 Score =  547 bits (283), Expect = e-160
 Identities = 300/307 (97%), Gaps = 4/307 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacagacatgactttcctacatctgtgatacagaggctatgatttataatgtaaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatacagacatgactttcctacatctgtgatacagaggctatgatttataatgtaaggac 447

                                                                       
Query: 61  cttcctatttcagaccacttgtgtctgaaaatttcagacacttcctatttcagttccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttcctatttcagaccacttgtgtctgaaaatttcagacacttcctatttcagttccatt 387

                                                                       
Query: 121 tgttctaagcaagccagggatgttcttacacttaaactggtttcaacattgtgttaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgttctaagcaagccagggatgttcttacacttaaactggtttcaacattgtgttaatcc 327

                                                                       
Query: 181 attgtttcacataat---tctagacattaatatgacttcatgaagattaaagataccacc 237
            || |||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttctttcacataataattctagacattaatatgacttcatgaagattaaagataccacc 267

                                                                       
Query: 238 agcactctgtctctatttctactcatttattacaattctggcttttatcttcactgacaa 297
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 266 agcactctgtctctatttctactcatttactacaattctggcttt-atcttcactgacaa 208

                  
Query: 298 tctcatg 304
           |||||||
Sbjct: 207 tctcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 706
Length adjustment: 9
Effective length of query: 295
Effective length of database: 697
Effective search space:   205615
Effective search space used:   205615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)