BAC Information

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BAC

Clone NameMSMg01-420J23
Chromosome16 (Build37)
Map Location 11,404,269 - 11,404,482
singlet/doubletsinglet
Overlap genenone
Upstream geneNubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420J23.T7 (MSMg01no420_j23.b1)MSMg01-420J23.TJ (MSMg01no420_j23.g1)
ACCAG515445AG515446
length739768
length of high quality
(start - end)
214 (326 - 539)52 (439 - 490)
definitionCHROMAT_FILE: MSMg01no420_j23.b1 PHD_FILE: MSMg01no420_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:32 2005CHROMAT_FILE: MSMg01no420_j23.g1 PHD_FILE: MSMg01no420_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCAAAATTGCGGGCGCTAATAGATCACTATATTCTCAAGATGCGC
GGAATCCCTGTTTTCCCCTCCACCGCCATGTTAGANGAGTGTCTACATTT
CCGGAGGCCAGATTCTTGAGCCCCTAATATTATGGGGTAGTACCCCGAAA
TGAGGATATACCTGTGAGAACAAGTTTTCGCACACTGTAGGATGGCTTCT
CGGCTCTAAGTGGCAGGCCTGTTGGAATACCATCCTGGCCCCCTCAGACT
CCTCTGCTCTTGTCAGGTCCTGGGGAACAGGAAAGACCTGTCACTAGTAA
ATCCACCCAAACACTGATCTTTTTCTGAATACTCTCCCAGATTCCAGAAA
CAAGAATTTAACCTGAGGATCTCACAGTTCAGCAAAGGTGACCTTTATAT
AAAACAACTGAATTATGTAATAACATGAAAAATAGTAAGTTCTGAGAAGC
AGTGTATGTGGACCCAACTCCCAGCATGGCAACCTCTTTGCCAAATGTCA
ACTTTGAAATTGTCTTTCCTCTGAAGCTTACAGCATGGAGAGCATCGGAG
ATGAGCAAAGGCAGATGGCCAGTGCACGTGTGTGAATGATAGTCCAAACC
TGGCACATTTTAAACTTATTTATTTTATGTGCGGCGAAGGTTTGGCCTGC
ATGTGTGTATGTGGGCCCCAACGCTGTGGCCGGACCCCCCCCCAAACCCG
ATAAAATAAAAAATTTGAATCCCCTGGCAGAAGCTTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGTGATCGATCCTCGGACTGATTGCGGACTCTCC
GAGGCAAGAGTCAGAGAATGGACTGTATAGGAGCTGAAGGTGTTTGCAAC
TCGCATAGGAAGCATAGATACCATCCTTCACTCACATGCCCGAGAGCTCC
CAGGGACTCAGGCCGCGAAGCAGAGGGGCTCTCTTCGACGCACCTGTGAG
TCCAACTGCATATGATCTCTAGATGGCTTTATCCGCTGTCCATAGGAGGG
GACGCCCTTGGTTCTGCGAATGTTCAGTGACCCACTGTAGTGGAATGCTA
GGGCACTGAGGCAAGAAAGACTGGATAGGTGGGGGAGCACTCTCATACAA
GCAGAAGTGAGGGATGACATAGTAGGGAAACTGATCTGGTTTTGCTATTG
AAAGGTGAAAGATCTAGAACTCTTTGATATTCTTAACTTCCAGTAATGGA
TCTTCAACATACACCCCACACCTCTCAATGCGAGCTGATTCAGTGACTGG
GGGCTTTCTAATGGTGCATTTGGAACGGGATAAGATGTCCAGCATTGGCT
GGTTCTCGCAACCCCCCTAAGGAGGGAACTTTATCAGAAGAATTGGAGTG
GACTCTATACCATTTTGGGGTTACAAACAAAACTCCTCCCTCCGGGGGCT
TTCCTGAAATAAACTTATTATTACTGTGTTTTGGGGAGATTTTGTTTTTT
CAAACCCTCCCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_j23.b1 MSMg01no420_j23.b1 CHROMAT_FILE:
MSMg01no420_j23.b1 PHD_FILE: MSMg01no420_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:32 2005
         (214 letters)



>mm_chr16_11404069_11404682
          Length = 614

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatactctcccagattccagaaacaagaatttaacctgaggatctcacagttcagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgaatactctcccagattccagaaacaagaatttaacctgaggatctcacagttcagcaa 355

                                                                       
Query: 61  aggtgacctttatataaaacaactgaattatgtaataacatgaaaaatagtaagttctga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 354 aggtgacctttatataaaacaactgaattatgtaatagcatgaaaaatagtaagttctga 295

                                                                       
Query: 121 gaagcagtgtatgtggacccaactcccagcatggcaacctctttgccaaatgtcaacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaagcagtgtatgtggacccaactcccagcatggcaacctctttgccaaatgtcaacttt 235

                                             
Query: 181 gaaattgtctttcctctgaagcttacagcatgga 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gaaattgtctttcctctgaagcttacagcatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)