BAC Information

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BAC

Clone NameMSMg01-420P06
Chromosome16 (Build37)
Map Location 92,512,384 - 92,512,663
singlet/doubletsinglet
Overlap geneClic6
Upstream geneLOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik
Downstream geneRunx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P06.T7 (MSMg01no420_p06.b1)MSMg01-420P06.TJ (MSMg01no420_p06.g1)
ACCAG515696AG515697
length721734
length of high quality
(start - end)
143 (361 - 503)280 (324 - 603)
definitionCHROMAT_FILE: MSMg01no420_p06.b1 PHD_FILE: MSMg01no420_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005CHROMAT_FILE: MSMg01no420_p06.g1 PHD_FILE: MSMg01no420_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTAACAATATGTGGGGCCGATAAGAAGATCACCTCACAGACGAGAG
NNGAGAGANTCTTCTCCCGACATCACAACTACGAGAAAGGGGCTTGCTGA
ACTCTACTAATGACGATTATTCTCTAAAGACCGCCGCTAGACGATCTTTC
TTCTTTTCTTTTTTCTTTTCCGTCCTACTAACCTCTCCCCAGGTATTCTT
ACATGAACTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGGCTGTAT
TCTTATTTTGAGTACCATATTTTCTCTTTGCTACTATTCTCTCTCCCCGC
TTTACTTCAGATATTGTTGCTTGAATTTCATCCAGAATCCACCCTGCCTT
AACCTCTTTATAACATGTGAAAAGGAACAAAAGGGCTTCTAACACTAGAG
AAAGTTCAAGGCCAAACATATCTTATAAAGTTATTTTCCACTTTACTTCT
GATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGGCCAGGCTTACCTCG
CAAAGCTGTACTCACTGTCACTCCCGTTCCCCAGCTGTAAAAGTCTGAAT
TCATGCAGCTGAATCCTTCTTACCAGTCTGCTTTACGGGAACCTTTATTA
CCGCGACCCGCAGTTCTGGTTCCGGAATGACGGATCTTCCTTTGTTTTTT
TCCGACCTTTTTCCCGTCCCCGTAATTCTGCACCCATTGCTATTAATACC
GGTCTTCCGCCCGGGGCCAGA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTCTTTGACCAGGTCCAGAGAAACGACT
TTTGTGTCAAGTTCAGAGGAACCCAAAATTGGTGAGAGAGGTCCTACGGA
GCCTGGGTGTTCCAACACACTCATAAACCACATAAGGGGATAACAAACAA
GGTGACGTAAAAGCATGAGACATCAACTAGAACATCACACACACTGTCTA
CATTCGCCAACTAAACACTACTGCTAGGGAGCGGGGACAGGGACGGGGGC
GGGGGCGGGGGGGCATTGTTCAAGAACACCTTTGCCATGAAATAAATACA
GGGCTCTGGGGAGATGCTGACCTCACAGACCTCAGAATCTAACTCCGCAG
CTCAAATTCTAGAATTTCTATCCGTGAGTCTCTCTTCCGGGCTGATGCCA
AGTGGTTCCCTGGCATTACTGTTAGAAGACTCACCACCATGGCCCCTCCT
CTCTCTCCTGGTACCCCCTGCTCTAGCTTTGTTCTGCTCAGCAGCATCTG
TCTCCTGTCTTCCTCCACAGTCTGTACCTTTGTCAACCTCTCCTCTCTCA
ATCAGGAACAGGATGGACCCACTGGGAGACCTGAGCAGACCACCCTGACG
TTGAAAAAGGGCCGGACTGGTGTAACCCCTAAAGATGTCTTACGACCACC
ATGAATGTCTGGTTTCCTTAATAATAAAGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p06.g1 MSMg01no420_p06.g1 CHROMAT_FILE:
MSMg01no420_p06.g1 PHD_FILE: MSMg01no420_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:57 2005
         (280 letters)



>mm_chr16_92512184_92512863
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacacctttgccatgaaataaatacagggctctggggagatgctgacctcacagacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaacacctttgccatgaaataaatacagggctctggggagatgctgacctcacagacctc 421

                                                                       
Query: 61  agaatctaactccgcagctcaaattctagaatttctatccgtgagtctctcttccgggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agaatctaactccgcagctcaaattctagaatttctatccgtgagtctctcttccgggct 361

                                                                       
Query: 121 gatgccaagtggttccctggcattactgttagaagactcaccaccatggcccctcctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gatgccaagtggttccctggcattactgttagaagactcaccaccatggcccctcctctc 301

                                                                       
Query: 181 tctcctggtaccccctgctctagctttgttctgctcagcagcatctgtctcctgtcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctcctggtaccccctgctctagctttgttctgctcagcagcatctgtctcctgtcttcc 241

                                                   
Query: 241 tccacagtctgtacctttgtcaacctctcctctctcaatc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tccacagtctgtacctttgtcaacctctcctctctcaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)