Query= MSMg01no421_b20.b1 MSMg01no421_b20.b1 CHROMAT_FILE:
MSMg01no421_b20.b1 PHD_FILE: MSMg01no421_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:09 2005
(508 letters)
>mm_chr16_89578742_89579649
Length = 908
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcagaaatctgcgactgcctagttttcaaaggtctgagccttctagactagtg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcttcagaaatctgagactgcctagttttcaaaggtctgagccttctagactagtg 649
Query: 65 aagtgcttatcatctgaagtaattttgagagttgctacgtgccctgacactctccaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aagtgcttatcatctgaagtaattttgagagttgctacgtgccctgacactctccaagga 589
Query: 125 gcatcatagtgtttggcagagaagctggctgacagagattggatagtgtggtccaagcta 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 588 gcatcatagtgtttggcagagaagctggctgacagagattggataatgtggtccaagcta 529
Query: 185 cttgaaagacacgagaattgatctctttggtcaggtttgtttattgcttaccatagggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cttgaaagacacgagaattgatctctttggtcaggtttgtttattgcttaccatagggca 469
Query: 245 agcagctgggatctcaagtggaagttgtgcttggggttgccctcctgggacctgtaattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcagctgggatctcaagtggaagttgtgcttggggttgccctcctgggacctgtaattc 409
Query: 305 ctgcaggagctctcccgtgcttcccagataatgagccctcttcgttctctgagtatctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgcaggagctctcccgtgcttcccagataatgagccctcttcgttctctgagtatctct 349
Query: 365 agcatgaagaaacatgaaattcagatttcctgagaataagcaaactccatctcaacaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agcatgaagaaacatgaaattcagatttcctgagaataagcaaactccatctcaacaatt 289
Query: 425 gccatggccttaagaactcggggaacagcgattgtgtctcacagacaaagcatcctcacg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gccatggccttaagaactcggggaacagcgattgtgtctcacagacaaagcatcctcacg 229
Query: 485 cagaactgtgacccttccgtgcta 508
||||||||||||||||||||||||
Sbjct: 228 cagaactgtgacccttccgtgcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_b20.g1 MSMg01no421_b20.g1 CHROMAT_FILE:
MSMg01no421_b20.g1 PHD_FILE: MSMg01no421_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:09 2005
(456 letters)
>mm_chr16_89439676_89440529
Length = 854
Score = 779 bits (403), Expect = 0.0
Identities = 443/457 (96%), Gaps = 4/457 (0%)
Strand = Plus / Plus
Query: 1 aaacccaagcgccagtgggcactcagcacagttgttctagactcctggcctgtgctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacccaagcgccagtgggcactcagcacagttgttctagactcctggcctgtgctgaga 260
Query: 61 taataagga-cacagcaatagacagcacacatgcaaagcccttgggacatgggatatgca 119
|||||| || |||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 261 taataa-gagcacagcaatagacagcacacatgcgaagcccttgggacatgggatgtgca 319
Query: 120 gaatcaatagtccttcatttttacctctgtacatgaaacttgctaaagtaacacactgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 aaatcaatagtccttcatttttacctctgtacatgaaacttgctaaagtaacacactgct 379
Query: 180 cactatttacactattgtcctgtctattcactgcaatggaagcaaagcacgttccctcct 239
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 380 cactatttacactattgccctgtctactcactgcaatggaagcaaagca--ttccctcct 437
Query: 240 accactctaacgtatccgtagttcactaggacagccataactgacctgtcaagagataat 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accactctaacggatccgtagttcactaggacagccataactgacctgtcaagagataat 497
Query: 300 tggctatttgaaattatcaatgttattttatgtaaaagaagagaataaaaagcatgaacc 359
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 tggctatttgaaattattaatgttattttatgtaaaagaagagaaaaaaaagcatgaacc 557
Query: 360 cattagcaaaacaagcaccccctcttcatagatatatggaagcaccactatgtgaggtac 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cattagcaaaacaagcatcccctcttcatagatatatggaagcaccactatgtgaggtac 617
Query: 420 ttcacataatcatttgttatttaaaatataatgaaag 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttcacataatcatttgttatttaaaatataatgaaag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space: 376424
Effective search space used: 376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
