BAC Information

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BAC

Clone NameMSMg01-421N01
Chromosome16 (Build37)
Map Location 59,678,728 - 59,679,299
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneCpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421N01.T7 (MSMg01no421_n01.b1)MSMg01-421N01.TJ (MSMg01no421_n01.g1)
ACCAG516353AG516354
length7751,492
length of high quality
(start - end)
574 (43 - 616)---
definitionCHROMAT_FILE: MSMg01no421_n01.b1 PHD_FILE: MSMg01no421_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:07 2005CHROMAT_FILE: MSMg01no421_n01.g1 PHD_FILE: MSMg01no421_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAA
TTCTGTTTATCTCTTCATATTGGAAGTCAGCATATCTGCAATGGGTCCAG
TAACCCAGATTCACGTTTAGAAGCAGAAATAGCTTGATAAAAAATTCTCT
GACTGCTCTGTCCAAATACTGGCGATTCCCTGTTTGTCCTTGATTCCTTA
TCCATGCAATCAAGGTGTAGTTTTACACTTGACCATTTCCAACCAAGATG
CTTTCTAAGAAAAGTAATGAGACAGCGAGTAAAAGTCGAACCATGTTCTG
TTTCCGTGTCTTATAGACTTTACTGCACTTTCGTGAGTTAACAAAGCTGT
GGGCACAGATCAAATGGAACATTACAATGTTTTATGACTTTTAATGAGTT
CAGAAAATTTCAGACAGTTTTTAGGAAATGGTTTCTCCCTTCGCCGACTG
TGGTGTGTTTTATTACAATGAACAATTCTGAGTCGGCAGAATCTGTGTTA
GTGAATAATATAATGAGTTTCCCAAAGGTCAGTGGAATTGTACATTAGGG
AATGGAAATGAGGAAGGGGAAAAAAAAGCCGAATGCAGAGAACTATCGTA
TAAAANAAATAACAAAATATAATAGCAGGTGCCAGCTGCTCAGGCACTCA
GCAAGTACTTATTAAACATGTGCCACTCACCAGACCAGGTGTGCATGTGG
GACAAGGATGTGGGAAAATACAGCCCTCTGCGGGGTTAAATGGAATAAAC
AAAGTCTAAAATGACAGGGGCTGGA
TCTATTCTATTTATCTATTTCAACCTCACACTNCNCAATTAATATAGACA
GAAATAAACAATCCACAGAGATTATATCACACAAATAATAAAGAGAGCGC
ACCACACAAAATAATTATATATATACACTGCAACTCTACACATATCANAT
ACCAACACATCTCCTCATACTCACTACCGCTCACCNTATCTCATGTTATT
AATACAACTTACATACAAATATATTTACTAAATATACACTACCATACTCT
TCTTTNCTATACCACATATCATTACCTTCCTCCTCATCCTCTTCTGTATC
ATCTCACATTCCTATACATGACTCACCATACTGCTCATTCACTCTCATTC
TACAGNATACTACCATTCTATCTACTCACCACATTACTCATACTCCATGC
ACAACCTATCCTCTATCTACCTATTAACCTACATATACACTCACTCAATC
TTACTCTACATCACTACTACACACTCTATCACCACTTATCTCCTTCTCNA
TCTCTCATCAAGATCTTCTAATTTACTCTATACTCTCTAGTCTCTCTCTC
TACCTCCACTACTCCTCCTTCGTCTCTNTCTCATCTCATCCTTCACTGTC
TTTACTCGTCGTATTCCGCTTCTCTTTTCGCATTACCCGANTCTATACGT
TCTTTCTTCGANTCTCGATCNACCTCTATCTCGATCTCATCTTATCTCAT
CGTTNTAACGTATCGCACTCTCATCTCCAGTTTTACTCTCTACAATCGTT
CCACTCTCTTCTATACGATTATATTTTCTTATATACTCCTCACTCACTAT
CCGCCTACATCTACCATATCTCGGCGCTCTTATACCTTCATNTCATCGCT
CGTACACATATCTCTTTATTCAATCTCTACTATACTCGCTTCACCACAAT
ATTACCAACCTCATCACCACATTCATCATTTCCACACTATCGCACTCTCT
ATACTATCTCNCGTTCCACACTCACATACTGCCTGTCTCTCCTCTCTCAT
AATTAACATACACGACAACATAATATTAATATAACTCGATATACTCTATA
TCACNCCACAACATACATTATCCATTATCTGCTATCACTACATCGTACAT
CTACACAATCTAATTCATCTCCACATATTCTACCGACTCTCCACATTAAT
ATATTATCTACCATACATACNTCCATACACATATATATAATATCTATATA
CATAATACTATTAACACNTCCACTCTACTTCTGCTCATTTTATCTTTACT
CTTATCTTACTCGCACTCATCTATTATATTCTAGCATATACTGCTGACAC
CACATTATCTCTACATACACATACATNCTTTGCACTATATCCCATCTATC
AAATCAACCTTCTCCTANACCTCGCTCTTACTCTATATATACATCACTTC
ATCTATTCACTATCATATATCATACTCCTATCTATATCATAATCTCTATT
ATATATATCCACCATACTATCACCTCAATCTATTATACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_n01.b1 MSMg01no421_n01.b1 CHROMAT_FILE:
MSMg01no421_n01.b1 PHD_FILE: MSMg01no421_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:07 2005
         (574 letters)



>mm_chr16_59678524_59679499
          Length = 976

 Score = 1069 bits (553), Expect = 0.0
 Identities = 567/572 (99%), Gaps = 2/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctgtttatctcttcatattggaagtcagcatatctgcaatgggtccagtaaccc 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattctgtttatctcaacatattggaagtcagcatatctgcaatgggtccagtaaccc 717

                                                                       
Query: 65  agattcacgtttagaagcagaaatagcttgataaaaaattctctgactgctctgtccaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agattcacgtttagaagcagaaatagcttgataaaaaattctctgactgctctgtccaaa 657

                                                                       
Query: 125 tactggcgattccctgtttgtccttgattccttatccatgcaatcaaggtgtagttttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tactggcgattccctgtttgtccttgattccttatccatgcaatcaaggtgtagttttac 597

                                                                       
Query: 185 acttgaccatttccaaccaagatgctttctaagaaaagtaatgagacagcgagtaaaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 acttgaccatttccaaccaagatgctttctaagaaaagtaatgagacagcgagtaaaagt 537

                                                                       
Query: 245 cgaaccatgttctgtttccgtgtcttatagactttactgcactttcgtgagttaacaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cgaaccatgttctgtttccgtgtcttatagactttactgcactttcgtgagttaacaaag 477

                                                                       
Query: 305 ctgtgggcacagatcaaatggaacattacaatgttttatgacttttaatgagttcagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctgtgggcacagatcaaatggaacattacaatgttttatgacttttaatgagttcagaaa 417

                                                                       
Query: 365 atttcagacagtttttaggaaatggtttctcccttcgccgactgtggtgtgttttattac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atttcagacagtttttaggaaatggtttctcccttcgccgactgtggtgtgttttattac 357

                                                                       
Query: 425 aatgaacaattctgagtcggcagaatctgtgttagtgaataatataatgagtttcccaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatgaacaattctgagtcggcagaatctgtgttagtgaataatataatgagtttcccaaa 297

                                                                       
Query: 485 ggtcagtggaattgtacattagggaatggaaatgaggaagggg-aaaaaaaagccgaatg 543
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 296 ggtcagtggaattgtacattagggaatggaaatgaggaagggggaaaaaaaagccgaatg 237

                                           
Query: 544 cagagaactatcgtataaaanaaa-taacaaa 574
           |||||||||||||||||||| ||| |||||||
Sbjct: 236 cagagaactatcgtataaaaaaaaataacaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 976
Length adjustment: 10
Effective length of query: 564
Effective length of database: 966
Effective search space:   544824
Effective search space used:   544824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)