BAC Information

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BAC

Clone NameMSMg01-422C12
Chromosome16 (Build37)
Map Location 64,255,141 - 64,255,688
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422C12.T7 (MSMg01no422_c12.b1)MSMg01-422C12.TJ (MSMg01no422_c12.g1)
ACCAG516613AG516614
length1,157719
length of high quality
(start - end)
---548 (64 - 611)
definitionCHROMAT_FILE: MSMg01no422_c12.b1 PHD_FILE: MSMg01no422_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:33 2005CHROMAT_FILE: MSMg01no422_c12.g1 PHD_FILE: MSMg01no422_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGCATATCTATTGAACGTGGTGTTGTATATACTATAATGAAATAGTGT
AGAAAAATAGGTGCGAGATATAACTCTCTGTTATGTGTTTAATCGCAGGC
GCAAGTTACACTGATCGAGAAGTTCGATGTTAATCTGCGTGAGAGATGTG
GGTGATAGTTGGTGCATGTGTTGGGGAGCTTAGGATGTTGAGATAATTAA
TAGAGTTGTGGTGATTTGTGAGATATTTTAGTGAGTGTGTAGGAGGTGTA
CTGATGATAGATGTGGTAGACGTGTGAAGAGCTAAATAAATATGTANACG
TAAACACAAGTAAGCAAGACGCACCCCTTCACTACCCTACTTATAACCTC
TTAATCATATAATAGCTCCTACAAAGTTCTCAACGACCCTCTACGCATAT
CGTGTTAGTAGAACATGTACATTAGGTAGGCTCGAGTAGCTAGCCACTAC
TATCATAATGACAATCCACAAACCAGAGCCTCTAAACCTTATACACAATC
ATATATGATTAAGGACAAATATGGTGATTTTATATAGATACAATGCGATT
AATATCGTTACTNCTACTTATCTATACGTCATAGTATATGACTTAAGCAC
ATTTACTATATCTTAGACGTCCTCCTTCTTACATAGATACGACCGACGAC
AGAGTTCTAGCTGCTATACGCACGCAACGCACTACTATCGCATTCAGTAT
CATTTCATAACTATAGACGATCGATGCGCGCTGACGCATAGTATATTTAT
CAGATGCATACTAACATATCACATATTATATCGTCACATATCCACGCCCG
ATCATATGCCAGCACAGGCCAGATACTAGTGAGCTATATAGTAACCGACT
ATAACCGAGATCAGCACGTGTTATATCACATCCACTAATTATTCATCCGC
CCTACTACTTNCATCACACGCTTCATANATATAAAGTGATAATCCTACTA
TAGACACATCCTAGCAATCACCGTGCGCTATCCCTACACTCTAAAACACA
TACACAACCGATTTTCAGTATATCACCCACTGCTATAGCAACTATGTTCA
AGTAAGAACTACAATCTCTTTNTGCGACGATACAGAGCACCTATCAATTT
ATTATCCTCTCTACCGCCTATAGTACTAGACTCTGTATCACAACAGATAC
ATATCTN
TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTTCCGAAATTCCATAGTTCTTTGATAATCCACCTGGGCTACACAGTC
CAGGGCTCTGATATTGTAGTTATCCTTGCCATTATTCATGTCCTGTCAAA
ACCTTAAAGCTCCATAATGCAATCTATAAGAGACTTGGCAAAAAGACCCA
GAGTGTATCTTTTCGTTCTTTTATTCTCTGAGACCATCTTAGAATATACA
ATTGTTTGGCAACACAAGTGATAAAAACCAGACATGTTGAGAGATCTATT
GGTATGGATAAATCTTATCTTGTTTTCCTCTCTAAACTTGGCAGCCACTT
TTGACATCTCTCAAGTTAATCCATCAAGGTTAAAGAACACATTGTGGCAT
ATCCAAGCACTAAATTTTAATTGACTGGGGATAGCACTGCTTCCCATGTC
CTTTGGAACAAACCACAGCACACGGGAGATGTTTTCGTGCTGTTTCGTTT
GATTTCACACGGCAGTAAGAAGAATTGTTTATCTGTTCCAAATTAGAAAT
CAGAAAACACATTTTTTTATCTTTCTTTTGAATCATGGAATAGATTTAAT
GTTTTCAAAGTTAAGTAAATGAACAAGGAATTATGGTTGATCCTTCACAA
TGAACTATTCTAATAATAGAATTAAGTGAGCCCATAATATACCGTTAGAC
ATAATAAAGGGATTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_c12.g1 MSMg01no422_c12.g1 CHROMAT_FILE:
MSMg01no422_c12.g1 PHD_FILE: MSMg01no422_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:33 2005
         (548 letters)



>mm_chr16_64254941_64255888
          Length = 948

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatagttctttgataatccacctgggctacacagtccagggctctgatattgtagttat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 748 ccatagttctttgataatccacctgggctacacagtcccgggctctgatattgtagttat 689

                                                                       
Query: 61  ccttgccattattcatgtcctgtcaaaaccttaaagctccataatgcaatctataagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccttgccattattcatgtcctgtcaaaaccttaaagctccataatgcaatctataagaga 629

                                                                       
Query: 121 cttggcaaaaagacccagagtgtatcttttcgttcttttattctctgagaccatcttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cttggcaaaaagacccagagtgtatcttttcgttcttttattctctgagaccatcttaga 569

                                                                       
Query: 181 atatacaattgtttggcaacacaagtgataaaaaccagacatgttgagagatctattggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atatacaattgtttggcaacacaagtgataaaaaccagacatgttgagagatctattggt 509

                                                                       
Query: 241 atggataaatcttatcttgttttcctctctaaacttggcagccacttttgacatctctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atggataaatcttatcttgttttcctctctaaacttggcagccacttttgacatctctca 449

                                                                       
Query: 301 agttaatccatcaaggttaaagaacacattgtggcatatccaagcactaaattttaattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agttaatccatcaaggttaaagaacacattgtggcatatccaagcactaaattttaattg 389

                                                                       
Query: 361 actggggatagcactgcttcccatgtcctttggaacaaaccacagcacacgggagatgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actggggatagcactgcttcccatgtcctttggaacaaaccacagcacacgggagatgtt 329

                                                                       
Query: 421 ttcgtgctgtttcgtttgatttcacacggcagtaagaagaattgtttatctgttccaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcgtgctgtttcgtttgatttcacacggcagtaagaagaattgtttatctgttccaaat 269

                                                                       
Query: 481 tagaaatcagaaaacacatttttttatctttcttttgaatcatggaatagatttaatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagaaatcagaaaacacatttttttatctttcttttgaatcatggaatagatttaatgtt 209

                   
Query: 541 ttcaaagt 548
           ||||||||
Sbjct: 208 ttcaaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)