Query= MSMg01no422_j03.b1 MSMg01no422_j03.b1 CHROMAT_FILE:
MSMg01no422_j03.b1 PHD_FILE: MSMg01no422_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(638 letters)
>mm_chr16_66273117_66274156
Length = 1040
Score = 1178 bits (609), Expect = 0.0
Identities = 629/637 (98%), Gaps = 2/637 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctcaacctttcaaaccttagcatcggttctccatgggtcctagtattttctc 63
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 840 ggaattctctcaacccttcaaaccttagcatcggttctccatgggtcttagtattttctc 781
Query: 64 tcagaagagatggtccagggtgcctagagagtgcaacagtaaagagggcttaggagtgga 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tcagaagagatggtccagggtacctagagagtgcaacagtaaagagggcttaggagtgga 721
Query: 124 cttcttttattctttgagagaacattggatgcacttgaaattgacagaccataaaatttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cttcttttattctttgagagaacattggatgcacttgaaattgacagaccataaaatttt 661
Query: 184 atagaaccttttgccttctgagctattaagtggctggtaaaaggcaaaggttaataaact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atagaaccttttgccttctgagctattaagtggctggtaaaaggcaaaggttaataaact 601
Query: 244 cctcttgctcactttatgctattgcaaattatttccctctcacttgcgaacttgctaatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cctcttgctcactttatgctattgcaaattatttccctctcacttgcgaacttgctaatg 541
Query: 304 ttttgtcttaagcatacttcttaaatctgtcttactctcggctttaccactatcctaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttttgtcttaagcatacttcttaaatctgtcttactctcggctttaccactatcctaatg 481
Query: 364 cagactattagcaattttaaaagtcgattctgaaccgcgccattgccagcagattcaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagactattagcaattttaaaagtcgattctgaaccgcgccattgccagcagattcaata 421
Query: 424 tttttctccataaaaacacgaagacttcagtctaataaaatgtaaacgtgagtgaaaccg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttttctccataaaaacacgaagacttcagtctaataaaatgtaaacgtgagtgaaaccg 361
Query: 484 cttgttcccccca--cccccaagcagtggaacaatctacgctcttccttctgaaggatgc 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttgttccccccctccccccaagcagtggaacaatctacgctcttccttctgaaggatgc 301
Query: 542 tgtgtagctcacatgcacaattcaaatgttgttgagggaataatagatgatgcgcagacn 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtgtagctcacatgcacaattcaaatgttgttgagggaataatagatgatgcgcagaca 241
Query: 602 aagagaatgtanaactaagacatttcatctatcccgg 638
||||||||||| |||||||||||||||||||||||||
Sbjct: 240 aagagaatgtaaaactaagacatttcatctatcccgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1040
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1030
Effective search space: 646840
Effective search space used: 646840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j03.g1 MSMg01no422_j03.g1 CHROMAT_FILE:
MSMg01no422_j03.g1 PHD_FILE: MSMg01no422_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(555 letters)
>mm_chr16_66118016_66118971
Length = 956
Score = 990 bits (512), Expect = 0.0
Identities = 545/556 (98%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 1 acctttccacccagagagagtaatgccttttcaaaatgggagtggagaaaaaataaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctttccacccagagagagtaatgccttttcaaaatgggagtggagaaaaaataaaaat 260
Query: 61 tgctggcaagtgcgggggtggtaaggtggtggtgaactgattaaaagctgcttcagcgtg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggcaagtgcgggggtggtagggtggtggtgaactgattaaaagctgcttcagcgtg 320
Query: 121 gtgttagtgtagtgatataaggattacttaatatagttttgcatacccttatcatgagca 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gtgttagtgtagtgatataaggattacttaatatagttttgcatagccttatcatgagca 380
Query: 181 caagaagggatatgaacattttatcttcacataaaatagcttacaaaactgcagaacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaagggatatgaacattttatcttcacataaaatagcttacaaaactgcagaacaag 440
Query: 241 agacaattatcagtggtagtagactgccttctaggtaaaaatgacttattaagaaatcct 300
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 agacagttatcagtggtagtagactgccttctaggcaaaaatgacttattaagaaatcct 500
Query: 301 ctcaatatttttataattaatgccccatttaatagttttcaaaacccttttccagactta 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 501 ctcaatatttttataattaatgccccatttaatagtttccaaaaccctttcccagactta 560
Query: 361 atacaagacctatcatatagaagttttaatgtacttatttaaattaagaaaaaaaaa-cc 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 acacaagacctatcatatagaagttttaatgtacttatttaaattaagaaaaaaaaaacc 620
Query: 420 ttacagataaaacccatgaatgctaattacaggttagtaaaaagtgtcatgattttcatt 479
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct: 621 ttacagataaaacccatgaatgctaattacagattagtaaaaattgtgatgattttcatt 680
Query: 480 ctctgtgctgttcagcttgtaaactttcttgggaatgaatagtaaaagtgtttaaaagct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctgtgctgttcagcttgtaaactttcttgggaatgaatagtaaaagtgtttaaaagct 740
Query: 540 aatcgcttaaaaagtc 555
||||||||||||||||
Sbjct: 741 aatcgcttaaaaagtc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space: 515570
Effective search space used: 515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
