BAC Information

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BAC

Clone NameMSMg01-422M05
Chromosome16 (Build37)
Map Location 49,305,963 - 49,455,771
singlet/doubletdoublet
Overlap geneEG216818, LOC628903
Upstream geneDppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
Downstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M05.T7 (MSMg01no422_m05.b1)MSMg01-422M05.TJ (MSMg01no422_m05.g1)
ACCAG517076AG517077
length773731
length of high quality
(start - end)
100 (124 - 223)244 (67 - 310)
definitionCHROMAT_FILE: MSMg01no422_m05.b1 PHD_FILE: MSMg01no422_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:17 2005CHROMAT_FILE: MSMg01no422_m05.g1 PHD_FILE: MSMg01no422_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,305,963 - 49,306,062)(49,455,529 - 49,455,771)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCTTGAGGGGCGCGGAATTCCAAATC
ATGCCAAAAATTTGGNGCTGCATGACTCTCACATCAAATGTAGCATCCAA
CATCACCTATTCAAACGAACAAAACCTATTTCAGTTGCTCTCAGAGAGGC
ATGCGCTGTCCTGGTTTCTGTTGGTTAGGCTCTATATATTGTAGCTTTCA
AGAAGCAAGTCGTTTCATTTCAAGCGATCAGTATCTTGTTTGATATATTG
TAGGAGATCTTAGTCTCGTTGCTACAAGCAATATGTGACCAGACCAACTG
AAAGGTTTTCTATTTTGCTNGCGCNACAGCTTCGACGGGGATAAATCTTT
TATCTTAGCAACAGTCGGGCCAGGCTTATCGCTTGGATGGCTGGCCACAA
ACTGCGGTGCTCATAGTCGCGATTCTCTTGAACGCTAATGTAATGTTATT
CTCCATCCTTATTATCGTGTACTGTTTTTTTGTAACTTGAGAAAATAGTT
CCCTTTCCTTGATTTTTATTGACAATTTTTTCCATTTACAACCTCTTCCT
TTTTATCTTTTTTTCCCCCGCGCCCCCTTTATTTTTTTTCTGTTTCTTCC
CAGTCTACCCTCTGTTTTCTCTTTTCTTTCCCTTATTGCCCGAATTTACC
TCGTTCCCATGCCGCCTACCCCACCTTTTCTTTTTTTTCTTCTTGTTTCT
CTCTAATTTCTTAATCTTTTACCCTAATTAATATCCAATACTCCCCTCCC
CATTGCTCTACCCTATTCTTTTT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTACGAGAAAATCAGAAGAGTACTCCTCTGGTCCTGAGATTTTCTTTG
CTCAGAGATTTATTGCTTTCCATTGCTTGTTATGAATCTGTCTTTATATC
TTCCTGGTTCCATTCATGTATCTCTAGAAAATTTTCCATGCCTTCTAAAT
TTTCCAACTGATAGGAGTATGTGATCTTTCAAAGTGTTCCATATTTATCA
TTTAGCTTTAAGTGATATCATTTGTAATATACACTGTTTCTAAATGCATT
AATTTGGAATGTATTTCTTTTTTGATAGGTGTGCCTACTATTTTGCCAAT
CTTGTGTATCTTTCAAAGAAGCAACTTTTTTCCCAGTGATCCTTGATACT
GTTTTGTTTTCGGCTTTCTAAATTTGAGCTTTGAGTTTTATTATTTATAT
CCTTCTACTAATTTAGATAGCCCTTGCTTTTTCAAAACCTTAAGGTGCAA
TCTTAATATTATTTGTGAATTCTCCGATTTCTTTAAAATTTTTTATTTTA
TTTATGACCATGGGAGATGACATTTTTGTCTCAATCATTTCTGGAGATGA
CAGTATAACTTTATAGAGAAAGTTTTTCTCTTCTACCTACACTTGGTTTC
TTTTATTTATACTCCTATTATCATGTTTTGTAATTTCACTCAATTATACA
TCTTTACTTATTACATCCCTTTTCCCCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m05.b1 MSMg01no422_m05.b1 CHROMAT_FILE:
MSMg01no422_m05.b1 PHD_FILE: MSMg01no422_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
         (100 letters)



>mm_chr16_49305763_49306262
          Length = 500

 Score =  178 bits (92), Expect = 8e-50
 Identities = 98/100 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctatttcagttgctctcagagaggcatgcgctgtcctggtttctgttggttaggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctatttcagttgctctcagagaggcatgcgctgtcctggtttctgttggttaggctct 260

                                                   
Query: 61  atatattgtagctttcaagaagcaagtcgtttcatttcaa 100
           || ||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atgtattgtagctttcaagaagcaagtcatttcatttcaa 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no422_m05.g1 MSMg01no422_m05.g1 CHROMAT_FILE:
MSMg01no422_m05.g1 PHD_FILE: MSMg01no422_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
         (244 letters)



>mm_chr16_49455329_49455972
          Length = 644

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagagtactcctctggtcctgagattttctttgctcagagatttattgctttccattgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 gaagagtactcctctggtcctgagattttctttgctcagagatttattgctttccattac 384

                                                                       
Query: 61  ttgttatgaatctgtctttatatcttcctggttccattcatgtatctctagaaaattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgttatgaatctgtctttatatcttcctggttccattcatgtatctctagaaaattttc 324

                                                                       
Query: 121 catgccttctaaattttccaactgataggagtatgtgatctttcaaagtgttccatattt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 323 catgccttctaaattttccaactgataggagtatgtgatctttcaaagtgttccataaag 264

                                                                       
Query: 181 atcatttagctttaagtgatatcatttgtaatatacactgtttctaaatgcattaatttg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcatatagctttaagtgatatcatttgtaatatacactgtttctaaatgcattaatttg 204

              
Query: 241 gaa 243
           |||
Sbjct: 203 gaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)