Query= MSMg01no422_n17.b1 MSMg01no422_n17.b1 CHROMAT_FILE:
MSMg01no422_n17.b1 PHD_FILE: MSMg01no422_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:24 2005
(535 letters)
>mm_chr16_3945086_3946020
Length = 935
Score = 980 bits (507), Expect = 0.0
Identities = 528/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 ccttgaagtactgatcctcctgcctccaccaagtgctgggattacaggctattcttggct 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgaactactgatcctcctgcctccaccaagtgctgggattacaggctattcttggct 260
Query: 61 taaatctaatctctttgtcaaggctgcatttgtctcgttacttgctgtgttgcctttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatctaatctctttgtcaaggctgcatttgtctcgttacttgctgtgttgcctttttt 320
Query: 121 cctacatatacagcatcacctctcactatcaactgtcaactgccatgataagtcttctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctacatatacagcatcacctctcactatcaactgtcaactgccatgataagtcttctga 380
Query: 181 atactcaagttttaggtttttgttttgaaactcacgttttagttttagctagcctcaaat 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 atactcaagttttaggtttttgttttgaaactcactttttagttttagctagcctcaaat 440
Query: 241 ttatgcttttcttttcttgtcctctcaagcactagaattacaagtgtgttccacatgtcc 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgcttctcctttcttgtcctctcaagcactagaattacaagtgtgttccacatgtcc 500
Query: 301 agctcctgcatactcattattttttagacttatttatttatttatttaaagtacactgta 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcctgcatactcatt-ttttttagacttatttatttatttatttaaagtacactgta 559
Query: 361 gctgtcctcagacactccagaagagggagttagatctcgttatggatggttgtgagccac 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 gctgtcctcagacactccagaagagggagtcagatctcgttatggatggttgtgagccac 619
Query: 421 cgtgtggttgctgggatttgaactcctgaccttcggaagagcagtcgggtgctcttaccc 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catgtggttgctgggatttgaactcctgaccttcggaagagcagtcgggtgctcttaccc 679
Query: 481 actgagccatctcaccagccccctcattttttttaagacagggtctcactatgta 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actgagccatctcaccagccccctcattttttttaagacagggtctcactatgta 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_n17.g1 MSMg01no422_n17.g1 CHROMAT_FILE:
MSMg01no422_n17.g1 PHD_FILE: MSMg01no422_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:24 2005
(511 letters)
>mm_chr16_4137328_4138238
Length = 911
Score = 957 bits (495), Expect = 0.0
Identities = 508/513 (99%), Gaps = 4/513 (0%)
Strand = Plus / Minus
Query: 1 ctggagtaaccttgaccatgatgggaacacagaacagagcaagattagactttagaatat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 711 ctggagtaaccttgaccatgatgggaacacagaacagggcaagattagactttagaatat 652
Query: 61 gaagatgggaaacatacagggtcagctactctctcaagtactttacaaagtaacctgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaagatgggaaacatacagggtcagctactctctcaagtactttacaaagtaacctgagt 592
Query: 121 ttcttttagaatctccacagacttctcattggcttctcttatctgtatttcttcattggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttcttttagaatctccacagacttctcattggcttctcttatctgtatttcttcattggt 532
Query: 181 agttcttaggtagtttcatccttaaatataatgtaatgtttttatttttaatggtgacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agttcttaggtagtttcatccttaaatataatgtaatgtttttatttttaatggtgacat 472
Query: 241 tgtagaa-tnnct-ttctgcctttcattgtagatgcttggtatttcagaggttgatggct 298
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgtagaact--ctgttctgcctttcattgtagatgcttggtatttcagaggttgatggct 414
Query: 299 tttgttctattttgtgggcagaaccttaatcacccatcattcataacattgctactatgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttgttctattttgtgggcagaaccttaatcacccatcattcataacattgctactatgg 354
Query: 359 gaattttttggctggaattactgacagtcaacttacaagctttctggaaggcctgtttgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaattttttggctggaattactgacagtcaacttacaagctttctggaaggcctgtttgt 294
Query: 419 aagttaaggactgcctgtactgtgttatggttacacttgttaccattttttttaatggaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagttaaggactgcctgtactgtgttatggttacacttgttaccattttttttaatggaa 234
Query: 479 tctggcattataatttaggtgtaattgaaagtg 511
|||||||||||||||||||||||||||||||||
Sbjct: 233 tctggcattataatttaggtgtaattgaaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
